miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24376 5' -53.6 NC_005264.1 + 126819 1.11 0.003553
Target:  5'- cUCGCUCAGAGUAUUGGCGGGCAACGCc -3'
miRNA:   3'- -AGCGAGUCUCAUAACCGCCCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 123039 0.8 0.356403
Target:  5'- cUCGCccacCAGGGgcUUGGCGGGcCGAUGCa -3'
miRNA:   3'- -AGCGa---GUCUCauAACCGCCC-GUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 4012 0.8 0.356403
Target:  5'- cUCGCccacCAGGGgcUUGGCGGGcCGAUGCa -3'
miRNA:   3'- -AGCGa---GUCUCauAACCGCCC-GUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 133879 0.79 0.38937
Target:  5'- gCGCUCAGAGUcUUGGCGuucacccacGGCucguACGCg -3'
miRNA:   3'- aGCGAGUCUCAuAACCGC---------CCGu---UGCG- -5'
24376 5' -53.6 NC_005264.1 + 160888 0.76 0.538964
Target:  5'- -aGCUCGGGGg---GGgGGGCAACGg -3'
miRNA:   3'- agCGAGUCUCauaaCCgCCCGUUGCg -5'
24376 5' -53.6 NC_005264.1 + 41862 0.76 0.538964
Target:  5'- -aGCUCGGGGg---GGgGGGCAACGg -3'
miRNA:   3'- agCGAGUCUCauaaCCgCCCGUUGCg -5'
24376 5' -53.6 NC_005264.1 + 14118 0.75 0.559203
Target:  5'- aUGCUCGGcg-GUUGGCGaGGUAGCGUg -3'
miRNA:   3'- aGCGAGUCucaUAACCGC-CCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 143215 0.75 0.610589
Target:  5'- aCGCUCAGAGggaauUGUUGGCGaGG--GCGCc -3'
miRNA:   3'- aGCGAGUCUC-----AUAACCGC-CCguUGCG- -5'
24376 5' -53.6 NC_005264.1 + 108703 0.74 0.641677
Target:  5'- -aGUUUAGcGUcggUGGUGGGCAGCGCc -3'
miRNA:   3'- agCGAGUCuCAua-ACCGCCCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 90437 0.74 0.662377
Target:  5'- cUCGCcgUAGAGaucgcucaGGUGGGCGGCGCg -3'
miRNA:   3'- -AGCGa-GUCUCauaa----CCGCCCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 126935 0.73 0.672694
Target:  5'- cUCGC-CGGAGUAcUGGgGGGacgUAACGCu -3'
miRNA:   3'- -AGCGaGUCUCAUaACCgCCC---GUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 7909 0.73 0.672694
Target:  5'- cUCGC-CGGAGUAcUGGgGGGacgUAACGCu -3'
miRNA:   3'- -AGCGaGUCUCAUaACCgCCC---GUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 106854 0.73 0.682977
Target:  5'- cUCGUUCaucugcGGGGUcaugGGCGGGCAcgaACGCa -3'
miRNA:   3'- -AGCGAG------UCUCAuaa-CCGCCCGU---UGCG- -5'
24376 5' -53.6 NC_005264.1 + 120489 0.72 0.743444
Target:  5'- gUGCgCGGAGUAggUGGCggGGGCGAgGCc -3'
miRNA:   3'- aGCGaGUCUCAUa-ACCG--CCCGUUgCG- -5'
24376 5' -53.6 NC_005264.1 + 66476 0.71 0.818122
Target:  5'- cCGCggcCAGAcucaaugcUUGGCGGGCuGCGCg -3'
miRNA:   3'- aGCGa--GUCUcau-----AACCGCCCGuUGCG- -5'
24376 5' -53.6 NC_005264.1 + 139731 0.7 0.834398
Target:  5'- cUCGCUCGuuGGGa---GGCGGGCGgcagacaACGCg -3'
miRNA:   3'- -AGCGAGU--CUCauaaCCGCCCGU-------UGCG- -5'
24376 5' -53.6 NC_005264.1 + 141935 0.7 0.835236
Target:  5'- aUGUUCAGAGgagcgGGUGGGCGguACGa -3'
miRNA:   3'- aGCGAGUCUCauaa-CCGCCCGU--UGCg -5'
24376 5' -53.6 NC_005264.1 + 122637 0.7 0.841873
Target:  5'- cCGCcgCGGGGggccgcgagGGCGGGC-GCGCu -3'
miRNA:   3'- aGCGa-GUCUCauaa-----CCGCCCGuUGCG- -5'
24376 5' -53.6 NC_005264.1 + 3610 0.7 0.841873
Target:  5'- cCGCcgCGGGGggccgcgagGGCGGGC-GCGCu -3'
miRNA:   3'- aGCGa-GUCUCauaa-----CCGCCCGuUGCG- -5'
24376 5' -53.6 NC_005264.1 + 34529 0.7 0.851593
Target:  5'- aUGCgguuGGGcGUUGGCGGGguACGUg -3'
miRNA:   3'- aGCGagu-CUCaUAACCGCCCguUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.