miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24376 5' -53.6 NC_005264.1 + 35158 0.67 0.94102
Target:  5'- -gGCcgCGGuGUGUcUGGUGGGCAAgGUu -3'
miRNA:   3'- agCGa-GUCuCAUA-ACCGCCCGUUgCG- -5'
24376 5' -53.6 NC_005264.1 + 16543 0.69 0.888115
Target:  5'- gCGCUUGcGcGUAUUucagcgcGGUGGGCGGCGCc -3'
miRNA:   3'- aGCGAGU-CuCAUAA-------CCGCCCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 150982 0.69 0.895571
Target:  5'- -aGCUCGcGAGUGgcGGCgacGGGCcGCGUg -3'
miRNA:   3'- agCGAGU-CUCAUaaCCG---CCCGuUGCG- -5'
24376 5' -53.6 NC_005264.1 + 64666 0.69 0.902101
Target:  5'- gUCGUUUAGGGgGUUugggccugccGGCGGGCAGgcCGUg -3'
miRNA:   3'- -AGCGAGUCUCaUAA----------CCGCCCGUU--GCG- -5'
24376 5' -53.6 NC_005264.1 + 125839 0.68 0.908392
Target:  5'- aCGgUCAGGGUGUUGcCGGagGCGGCGg -3'
miRNA:   3'- aGCgAGUCUCAUAACcGCC--CGUUGCg -5'
24376 5' -53.6 NC_005264.1 + 157334 0.68 0.908392
Target:  5'- aCGCcuucgCGGAGgccgacgaggGUUGGCGGGCccuggccguGAUGCu -3'
miRNA:   3'- aGCGa----GUCUCa---------UAACCGCCCG---------UUGCG- -5'
24376 5' -53.6 NC_005264.1 + 364 0.68 0.919677
Target:  5'- aUGC-CAGAccuUAUUGGUcuuugggGGGCAGCGCc -3'
miRNA:   3'- aGCGaGUCUc--AUAACCG-------CCCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 121682 0.68 0.920247
Target:  5'- cUCGuCUaCAGAGUccucUGGCcccgaccgcgaGGGCAGCGUg -3'
miRNA:   3'- -AGC-GA-GUCUCAua--ACCG-----------CCCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 52197 0.68 0.925807
Target:  5'- gUGCUgAGGGccguggGGCGcGGUGGCGCg -3'
miRNA:   3'- aGCGAgUCUCauaa--CCGC-CCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 6988 0.69 0.881806
Target:  5'- -gGCgCGGGGUugucccuGCGGGCGGCGCc -3'
miRNA:   3'- agCGaGUCUCAuaac---CGCCCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 116428 0.69 0.874581
Target:  5'- gUCGCUgGGGGcGUcUGGCcgcggGGGCGACGa -3'
miRNA:   3'- -AGCGAgUCUCaUA-ACCG-----CCCGUUGCg -5'
24376 5' -53.6 NC_005264.1 + 124706 0.69 0.874581
Target:  5'- gCGUUCccacGAGUAcagagcGcGCGGGCAACGCc -3'
miRNA:   3'- aGCGAGu---CUCAUaa----C-CGCCCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 160888 0.76 0.538964
Target:  5'- -aGCUCGGGGg---GGgGGGCAACGg -3'
miRNA:   3'- agCGAGUCUCauaaCCgCCCGUUGCg -5'
24376 5' -53.6 NC_005264.1 + 143215 0.75 0.610589
Target:  5'- aCGCUCAGAGggaauUGUUGGCGaGG--GCGCc -3'
miRNA:   3'- aGCGAGUCUC-----AUAACCGC-CCguUGCG- -5'
24376 5' -53.6 NC_005264.1 + 126935 0.73 0.672694
Target:  5'- cUCGC-CGGAGUAcUGGgGGGacgUAACGCu -3'
miRNA:   3'- -AGCGaGUCUCAUaACCgCCC---GUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 106854 0.73 0.682977
Target:  5'- cUCGUUCaucugcGGGGUcaugGGCGGGCAcgaACGCa -3'
miRNA:   3'- -AGCGAG------UCUCAuaa-CCGCCCGU---UGCG- -5'
24376 5' -53.6 NC_005264.1 + 122637 0.7 0.841873
Target:  5'- cCGCcgCGGGGggccgcgagGGCGGGC-GCGCu -3'
miRNA:   3'- aGCGa-GUCUCauaa-----CCGCCCGuUGCG- -5'
24376 5' -53.6 NC_005264.1 + 153556 0.7 0.851593
Target:  5'- aUGCgguuGGGcGUUGGCGGGguACGUg -3'
miRNA:   3'- aGCGagu-CUCaUAACCGCCCguUGCG- -5'
24376 5' -53.6 NC_005264.1 + 72268 0.69 0.867133
Target:  5'- gCGCUgCAGAGgcguacUGGCcGGCAACGa -3'
miRNA:   3'- aGCGA-GUCUCaua---ACCGcCCGUUGCg -5'
24376 5' -53.6 NC_005264.1 + 150606 0.69 0.867888
Target:  5'- gCGC-CAGAGgugGggcgagucugcucucUGGCGaGGCGGCGCg -3'
miRNA:   3'- aGCGaGUCUCa--Ua--------------ACCGC-CCGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.