miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24377 3' -53.8 NC_005264.1 + 35783 0.71 0.806982
Target:  5'- --gCGGAGGGCGCGguggcgccgucguggCGGGCGCCUCu -3'
miRNA:   3'- cggGUCUUUUGCGCa--------------GCUCGUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 154809 0.71 0.806982
Target:  5'- --gCGGAGGGCGCGguggcgccgucguggCGGGCGCCUCu -3'
miRNA:   3'- cggGUCUUUUGCGCa--------------GCUCGUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 43543 0.71 0.823503
Target:  5'- uGCCCAGAuguCGgguucuggaUGUCGAGCggcccGCCUCGc -3'
miRNA:   3'- -CGGGUCUuuuGC---------GCAGCUCG-----UGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 162570 0.71 0.823503
Target:  5'- uGCCCAGAuguCGgguucuggaUGUCGAGCggcccGCCUCGc -3'
miRNA:   3'- -CGGGUCUuuuGC---------GCAGCUCG-----UGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 153296 0.71 0.826903
Target:  5'- gGCgCGGgcGACGCGUCGAagaguaaguucgaggGCcCCUCGa -3'
miRNA:   3'- -CGgGUCuuUUGCGCAGCU---------------CGuGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 34269 0.71 0.826903
Target:  5'- gGCgCGGgcGACGCGUCGAagaguaaguucgaggGCcCCUCGa -3'
miRNA:   3'- -CGgGUCuuUUGCGCAGCU---------------CGuGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 25961 0.7 0.840212
Target:  5'- cGCCCAcuuuGAGCGCGucugcuUCGAuaACCUCGg -3'
miRNA:   3'- -CGGGUcu--UUUGCGC------AGCUcgUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 97656 0.7 0.840212
Target:  5'- uGCCguGAAAGCGCugacUCauGGCGCCUCGu -3'
miRNA:   3'- -CGGguCUUUUGCGc---AGc-UCGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 45566 0.7 0.848285
Target:  5'- cGCCCGuGucGGCGCGcaCGAGUcCCUCGg -3'
miRNA:   3'- -CGGGU-CuuUUGCGCa-GCUCGuGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 105558 0.7 0.85382
Target:  5'- aGCUCAGGAuacaauggagaccccCGCGggcuagggcUCGAGCGCCUCa -3'
miRNA:   3'- -CGGGUCUUuu-------------GCGC---------AGCUCGUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 85619 0.7 0.871298
Target:  5'- cGUCUuuAGGAAGCGCGcCGAGCcacuugguuAUCUCGg -3'
miRNA:   3'- -CGGG--UCUUUUGCGCaGCUCG---------UGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 47587 0.69 0.885573
Target:  5'- gGCUCGcGggGACGCGUUGGGgGagaCUCGc -3'
miRNA:   3'- -CGGGU-CuuUUGCGCAGCUCgUg--GAGC- -5'
24377 3' -53.8 NC_005264.1 + 59792 0.69 0.885573
Target:  5'- cGCCCgcAGggGGCGCGUaGcGCACCa-- -3'
miRNA:   3'- -CGGG--UCuuUUGCGCAgCuCGUGGagc -5'
24377 3' -53.8 NC_005264.1 + 68349 0.69 0.892375
Target:  5'- uGCCCAGAcguuGACGuCGUUGAGaaguCgCUCGg -3'
miRNA:   3'- -CGGGUCUu---UUGC-GCAGCUCgu--G-GAGC- -5'
24377 3' -53.8 NC_005264.1 + 101350 0.69 0.898948
Target:  5'- aGCCgAGAccgcgGGGCGCGUCGGcGCGCUa-- -3'
miRNA:   3'- -CGGgUCU-----UUUGCGCAGCU-CGUGGagc -5'
24377 3' -53.8 NC_005264.1 + 109266 0.69 0.898948
Target:  5'- cGCC------ACGCGUCGGGCGCgUCGu -3'
miRNA:   3'- -CGGgucuuuUGCGCAGCUCGUGgAGC- -5'
24377 3' -53.8 NC_005264.1 + 131050 0.69 0.905289
Target:  5'- aGCCCAGAgacgacccGAAUGCGUCcGAGaCGCUa-- -3'
miRNA:   3'- -CGGGUCU--------UUUGCGCAG-CUC-GUGGagc -5'
24377 3' -53.8 NC_005264.1 + 76693 0.69 0.905289
Target:  5'- uGCCCAGcuuGGCGCGgagCGcGGCGCaaCUCGc -3'
miRNA:   3'- -CGGGUCuu-UUGCGCa--GC-UCGUG--GAGC- -5'
24377 3' -53.8 NC_005264.1 + 100544 0.68 0.911394
Target:  5'- aGUCCGGAcGACGCucgCGGGCAUgUUGa -3'
miRNA:   3'- -CGGGUCUuUUGCGca-GCUCGUGgAGC- -5'
24377 3' -53.8 NC_005264.1 + 114262 0.68 0.917262
Target:  5'- uGUCCAccgcGAAGCGCGUCGuGGCAucaaugccccCCUCGu -3'
miRNA:   3'- -CGGGUc---UUUUGCGCAGC-UCGU----------GGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.