miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24377 3' -53.8 NC_005264.1 + 126626 1.12 0.003455
Target:  5'- aGCCCAGAAAACGCGUCGAGCACCUCGg -3'
miRNA:   3'- -CGGGUCUUUUGCGCAGCUCGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 128559 0.76 0.538262
Target:  5'- gGCCCucGAAcuuacucuucGACGCGUCGcccGCGCCUCGc -3'
miRNA:   3'- -CGGGu-CUU----------UUGCGCAGCu--CGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 9532 0.76 0.538262
Target:  5'- gGCCCucGAAcuuacucuucGACGCGUCGcccGCGCCUCGc -3'
miRNA:   3'- -CGGGu-CUU----------UUGCGCAGCu--CGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 114452 0.76 0.548241
Target:  5'- cGCCUcGAcGAa-CGUCGAGCGCCUCGa -3'
miRNA:   3'- -CGGGuCUuUUgcGCAGCUCGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 97937 0.74 0.650094
Target:  5'- aGUCCAGAGcuuCGCGUCGAGguCAUCUCc -3'
miRNA:   3'- -CGGGUCUUuu-GCGCAGCUC--GUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 51679 0.74 0.660329
Target:  5'- aCCCGGugguAACGCaGUUGAGCAUCUCc -3'
miRNA:   3'- cGGGUCuu--UUGCG-CAGCUCGUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 114692 0.73 0.690863
Target:  5'- cGCCgagcaGGAuuGCGCGgucUCGuGCGCCUCGa -3'
miRNA:   3'- -CGGg----UCUuuUGCGC---AGCuCGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 131914 0.73 0.690863
Target:  5'- aCCCGGAcGGAC-CGUCGAGCcgcccgGCCUCGc -3'
miRNA:   3'- cGGGUCU-UUUGcGCAGCUCG------UGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 12888 0.73 0.690863
Target:  5'- aCCCGGAcGGAC-CGUCGAGCcgcccgGCCUCGc -3'
miRNA:   3'- cGGGUCU-UUUGcGCAGCUCG------UGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 33502 0.73 0.720954
Target:  5'- uGCUCAGu--GCGCGUCGcuGCGCC-CGg -3'
miRNA:   3'- -CGGGUCuuuUGCGCAGCu-CGUGGaGC- -5'
24377 3' -53.8 NC_005264.1 + 152529 0.73 0.720954
Target:  5'- uGCUCAGu--GCGCGUCGcuGCGCC-CGg -3'
miRNA:   3'- -CGGGUCuuuUGCGCAGCu-CGUGGaGC- -5'
24377 3' -53.8 NC_005264.1 + 88086 0.72 0.740648
Target:  5'- cGCCaagCAGu--GCGCGUCGGGCACagcgUCGg -3'
miRNA:   3'- -CGG---GUCuuuUGCGCAGCUCGUGg---AGC- -5'
24377 3' -53.8 NC_005264.1 + 96280 0.72 0.740648
Target:  5'- cUCCAucguAGACGCGcUCGuGCGCCUCGg -3'
miRNA:   3'- cGGGUcu--UUUGCGC-AGCuCGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 153814 0.72 0.759005
Target:  5'- -gCCAGGcgcGAACGCGUCGGGacuaacggcggcuCGCCUCa -3'
miRNA:   3'- cgGGUCU---UUUGCGCAGCUC-------------GUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 113195 0.72 0.759961
Target:  5'- aCCCGacGucCGgGUCGAGCACCUUGg -3'
miRNA:   3'- cGGGUcuUuuGCgCAGCUCGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 13339 0.72 0.759961
Target:  5'- aGCCgaaGGGAAcgGCGCGaaUCGAGCGgCUCGa -3'
miRNA:   3'- -CGGg--UCUUU--UGCGC--AGCUCGUgGAGC- -5'
24377 3' -53.8 NC_005264.1 + 157036 0.71 0.788055
Target:  5'- -gCCGGAcuauuGAACGCcgUGGGCGCCUCGg -3'
miRNA:   3'- cgGGUCU-----UUUGCGcaGCUCGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 38009 0.71 0.788055
Target:  5'- -gCCGGAcuauuGAACGCcgUGGGCGCCUCGg -3'
miRNA:   3'- cgGGUCU-----UUUGCGcaGCUCGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 85707 0.71 0.79715
Target:  5'- aGCCaugaAAAACGCGgugcgCGAGCACCUUu -3'
miRNA:   3'- -CGGguc-UUUUGCGCa----GCUCGUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 95953 0.71 0.806096
Target:  5'- gGUCCGGGAuAugGUGUCGcGGCugCUCu -3'
miRNA:   3'- -CGGGUCUU-UugCGCAGC-UCGugGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.