miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24377 3' -53.8 NC_005264.1 + 76397 0.67 0.943007
Target:  5'- cGCCUcGAGGGCGUGgcacauaGGGCGCC-CGg -3'
miRNA:   3'- -CGGGuCUUUUGCGCag-----CUCGUGGaGC- -5'
24377 3' -53.8 NC_005264.1 + 45566 0.7 0.848285
Target:  5'- cGCCCGuGucGGCGCGcaCGAGUcCCUCGg -3'
miRNA:   3'- -CGGGU-CuuUUGCGCa-GCUCGuGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 105558 0.7 0.85382
Target:  5'- aGCUCAGGAuacaauggagaccccCGCGggcuagggcUCGAGCGCCUCa -3'
miRNA:   3'- -CGGGUCUUuu-------------GCGC---------AGCUCGUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 109266 0.69 0.898948
Target:  5'- cGCC------ACGCGUCGGGCGCgUCGu -3'
miRNA:   3'- -CGGgucuuuUGCGCAGCUCGUGgAGC- -5'
24377 3' -53.8 NC_005264.1 + 76693 0.69 0.905289
Target:  5'- uGCCCAGcuuGGCGCGgagCGcGGCGCaaCUCGc -3'
miRNA:   3'- -CGGGUCuu-UUGCGCa--GC-UCGUG--GAGC- -5'
24377 3' -53.8 NC_005264.1 + 153777 0.68 0.92289
Target:  5'- cGUCCuc--AGCGCGUCGGGU-CCUCa -3'
miRNA:   3'- -CGGGucuuUUGCGCAGCUCGuGGAGc -5'
24377 3' -53.8 NC_005264.1 + 107001 0.68 0.928279
Target:  5'- cGCCUGGAuauAUGCGauuuUUGGGCACCgCGg -3'
miRNA:   3'- -CGGGUCUuu-UGCGC----AGCUCGUGGaGC- -5'
24377 3' -53.8 NC_005264.1 + 113637 0.68 0.933427
Target:  5'- uUCCAGguAGCGCGggcgUGAGCGCUUg- -3'
miRNA:   3'- cGGGUCuuUUGCGCa---GCUCGUGGAgc -5'
24377 3' -53.8 NC_005264.1 + 128703 0.67 0.943007
Target:  5'- gGCCUuggGGGAGGCGgG-CucGCGCCUCGa -3'
miRNA:   3'- -CGGG---UCUUUUGCgCaGcuCGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 97656 0.7 0.840212
Target:  5'- uGCCguGAAAGCGCugacUCauGGCGCCUCGu -3'
miRNA:   3'- -CGGguCUUUUGCGc---AGc-UCGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 153296 0.71 0.826903
Target:  5'- gGCgCGGgcGACGCGUCGAagaguaaguucgaggGCcCCUCGa -3'
miRNA:   3'- -CGgGUCuuUUGCGCAGCU---------------CGuGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 162570 0.71 0.823503
Target:  5'- uGCCCAGAuguCGgguucuggaUGUCGAGCggcccGCCUCGc -3'
miRNA:   3'- -CGGGUCUuuuGC---------GCAGCUCG-----UGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 131914 0.73 0.690863
Target:  5'- aCCCGGAcGGAC-CGUCGAGCcgcccgGCCUCGc -3'
miRNA:   3'- cGGGUCU-UUUGcGCAGCUCG------UGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 152529 0.73 0.720954
Target:  5'- uGCUCAGu--GCGCGUCGcuGCGCC-CGg -3'
miRNA:   3'- -CGGGUCuuuUGCGCAGCu-CGUGGaGC- -5'
24377 3' -53.8 NC_005264.1 + 88086 0.72 0.740648
Target:  5'- cGCCaagCAGu--GCGCGUCGGGCACagcgUCGg -3'
miRNA:   3'- -CGG---GUCuuuUGCGCAGCUCGUGg---AGC- -5'
24377 3' -53.8 NC_005264.1 + 96280 0.72 0.740648
Target:  5'- cUCCAucguAGACGCGcUCGuGCGCCUCGg -3'
miRNA:   3'- cGGGUcu--UUUGCGC-AGCuCGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 13339 0.72 0.759961
Target:  5'- aGCCgaaGGGAAcgGCGCGaaUCGAGCGgCUCGa -3'
miRNA:   3'- -CGGg--UCUUU--UGCGC--AGCUCGUgGAGC- -5'
24377 3' -53.8 NC_005264.1 + 157036 0.71 0.788055
Target:  5'- -gCCGGAcuauuGAACGCcgUGGGCGCCUCGg -3'
miRNA:   3'- cgGGUCU-----UUUGCGcaGCUCGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 85707 0.71 0.79715
Target:  5'- aGCCaugaAAAACGCGgugcgCGAGCACCUUu -3'
miRNA:   3'- -CGGguc-UUUUGCGCa----GCUCGUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 154809 0.71 0.806982
Target:  5'- --gCGGAGGGCGCGguggcgccgucguggCGGGCGCCUCu -3'
miRNA:   3'- cggGUCUUUUGCGCa--------------GCUCGUGGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.