miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24377 3' -53.8 NC_005264.1 + 5021 0.66 0.974564
Target:  5'- uGCgCAGAGGAggccacgagguucCGCGUCGugGGCGCCg-- -3'
miRNA:   3'- -CGgGUCUUUU-------------GCGCAGC--UCGUGGagc -5'
24377 3' -53.8 NC_005264.1 + 7470 0.67 0.959351
Target:  5'- cGUCCGGAGAACGU--CGuGCgGCCUCc -3'
miRNA:   3'- -CGGGUCUUUUGCGcaGCuCG-UGGAGc -5'
24377 3' -53.8 NC_005264.1 + 8379 0.66 0.96287
Target:  5'- gGCgCCGGAcgcGGCGCGUUGAaGCugC-CGg -3'
miRNA:   3'- -CG-GGUCUu--UUGCGCAGCU-CGugGaGC- -5'
24377 3' -53.8 NC_005264.1 + 9532 0.76 0.538262
Target:  5'- gGCCCucGAAcuuacucuucGACGCGUCGcccGCGCCUCGc -3'
miRNA:   3'- -CGGGu-CUU----------UUGCGCAGCu--CGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 9676 0.67 0.943007
Target:  5'- gGCCUuggGGGAGGCGgG-CucGCGCCUCGa -3'
miRNA:   3'- -CGGG---UCUUUUGCgCaGcuCGUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 12888 0.73 0.690863
Target:  5'- aCCCGGAcGGAC-CGUCGAGCcgcccgGCCUCGc -3'
miRNA:   3'- cGGGUCU-UUUGcGCAGCUCG------UGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 13339 0.72 0.759961
Target:  5'- aGCCgaaGGGAAcgGCGCGaaUCGAGCGgCUCGa -3'
miRNA:   3'- -CGGg--UCUUU--UGCGC--AGCUCGUgGAGC- -5'
24377 3' -53.8 NC_005264.1 + 13434 0.66 0.974824
Target:  5'- gGCCCAGucuACGCG-CGAGCGg---- -3'
miRNA:   3'- -CGGGUCuuuUGCGCaGCUCGUggagc -5'
24377 3' -53.8 NC_005264.1 + 22511 0.67 0.95561
Target:  5'- aCCCAGAGAugGauugugguauCGUCGGGCugaUCGg -3'
miRNA:   3'- cGGGUCUUUugC----------GCAGCUCGuggAGC- -5'
24377 3' -53.8 NC_005264.1 + 25961 0.7 0.840212
Target:  5'- cGCCCAcuuuGAGCGCGucugcuUCGAuaACCUCGg -3'
miRNA:   3'- -CGGGUcu--UUUGCGC------AGCUcgUGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 30089 0.66 0.970437
Target:  5'- cGCCCGGAcagaaucgcgagucgAGAUGCGggcggCGcGGCACCgagcugCGg -3'
miRNA:   3'- -CGGGUCU---------------UUUGCGCa----GC-UCGUGGa-----GC- -5'
24377 3' -53.8 NC_005264.1 + 30809 0.67 0.959713
Target:  5'- gGCCCAGAcagGAGuCGCGUCccuaaaacguaaucuGGCGCCggUCGg -3'
miRNA:   3'- -CGGGUCU---UUU-GCGCAGc--------------UCGUGG--AGC- -5'
24377 3' -53.8 NC_005264.1 + 31578 0.66 0.96926
Target:  5'- gGCgCCAGAGGugGgG-CGAGuCugCUCu -3'
miRNA:   3'- -CG-GGUCUUUugCgCaGCUC-GugGAGc -5'
24377 3' -53.8 NC_005264.1 + 33502 0.73 0.720954
Target:  5'- uGCUCAGu--GCGCGUCGcuGCGCC-CGg -3'
miRNA:   3'- -CGGGUCuuuUGCGCAGCu-CGUGGaGC- -5'
24377 3' -53.8 NC_005264.1 + 34110 0.66 0.96287
Target:  5'- gGCUCAGcggcgcGAAACaGCGUCGAGgcgcgagccCGCCUCc -3'
miRNA:   3'- -CGGGUC------UUUUG-CGCAGCUC---------GUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 34269 0.71 0.826903
Target:  5'- gGCgCGGgcGACGCGUCGAagaguaaguucgaggGCcCCUCGa -3'
miRNA:   3'- -CGgGUCuuUUGCGCAGCU---------------CGuGGAGC- -5'
24377 3' -53.8 NC_005264.1 + 34751 0.68 0.92289
Target:  5'- cGUCCuc--AGCGCGUCGGGU-CCUCa -3'
miRNA:   3'- -CGGGucuuUUGCGCAGCUCGuGGAGc -5'
24377 3' -53.8 NC_005264.1 + 35783 0.71 0.806982
Target:  5'- --gCGGAGGGCGCGguggcgccgucguggCGGGCGCCUCu -3'
miRNA:   3'- cggGUCUUUUGCGCa--------------GCUCGUGGAGc -5'
24377 3' -53.8 NC_005264.1 + 36163 0.66 0.972142
Target:  5'- aGCUCGGGAAGCGCGaCGGGacgaUCGc -3'
miRNA:   3'- -CGGGUCUUUUGCGCaGCUCguggAGC- -5'
24377 3' -53.8 NC_005264.1 + 36590 0.66 0.962184
Target:  5'- cGCCCAGGAugguauaaagauACGCcUUGAGCGCUccCGa -3'
miRNA:   3'- -CGGGUCUUu-----------UGCGcAGCUCGUGGa-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.