Results 21 - 40 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24377 | 3' | -53.8 | NC_005264.1 | + | 38009 | 0.71 | 0.788055 |
Target: 5'- -gCCGGAcuauuGAACGCcgUGGGCGCCUCGg -3' miRNA: 3'- cgGGUCU-----UUUGCGcaGCUCGUGGAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 38413 | 0.67 | 0.951641 |
Target: 5'- gGCCgCGGAGcACGCGcucugCGAGUuCCUUGu -3' miRNA: 3'- -CGG-GUCUUuUGCGCa----GCUCGuGGAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 39359 | 0.67 | 0.959351 |
Target: 5'- cGCCCAGAAu-CGCGcagccaGAG-GCCUCa -3' miRNA: 3'- -CGGGUCUUuuGCGCag----CUCgUGGAGc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 41020 | 0.67 | 0.947441 |
Target: 5'- uCCCAGgcAGCG-GUCGAGgGCCg-- -3' miRNA: 3'- cGGGUCuuUUGCgCAGCUCgUGGagc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 43543 | 0.71 | 0.823503 |
Target: 5'- uGCCCAGAuguCGgguucuggaUGUCGAGCggcccGCCUCGc -3' miRNA: 3'- -CGGGUCUuuuGC---------GCAGCUCG-----UGGAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 45566 | 0.7 | 0.848285 |
Target: 5'- cGCCCGuGucGGCGCGcaCGAGUcCCUCGg -3' miRNA: 3'- -CGGGU-CuuUUGCGCa-GCUCGuGGAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 47587 | 0.69 | 0.885573 |
Target: 5'- gGCUCGcGggGACGCGUUGGGgGagaCUCGc -3' miRNA: 3'- -CGGGU-CuuUUGCGCAGCUCgUg--GAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 51679 | 0.74 | 0.660329 |
Target: 5'- aCCCGGugguAACGCaGUUGAGCAUCUCc -3' miRNA: 3'- cGGGUCuu--UUGCG-CAGCUCGUGGAGc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 56588 | 0.68 | 0.938336 |
Target: 5'- cGCCguCAGc--AgGCG-CGAGCGCCUCGc -3' miRNA: 3'- -CGG--GUCuuuUgCGCaGCUCGUGGAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 59001 | 0.66 | 0.966171 |
Target: 5'- gGCCCAGAAGcuugGCGCucagcgaaUCGAGCGCa--- -3' miRNA: 3'- -CGGGUCUUU----UGCGc-------AGCUCGUGgagc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 59792 | 0.69 | 0.885573 |
Target: 5'- cGCCCgcAGggGGCGCGUaGcGCACCa-- -3' miRNA: 3'- -CGGG--UCuuUUGCGCAgCuCGUGGagc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 61987 | 0.66 | 0.974824 |
Target: 5'- cGCCUGGucccAUGCGUCGAGgGagaaCUCGc -3' miRNA: 3'- -CGGGUCuuu-UGCGCAGCUCgUg---GAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 62458 | 0.66 | 0.975842 |
Target: 5'- gGCCCuAGAAcaagaaucgguguuGCGCGUCGuGCGcgcguCCUCu -3' miRNA: 3'- -CGGG-UCUUu-------------UGCGCAGCuCGU-----GGAGc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 65118 | 0.66 | 0.972142 |
Target: 5'- cUCCGGuGAACGCGaCGccaAGC-CCUCGg -3' miRNA: 3'- cGGGUCuUUUGCGCaGC---UCGuGGAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 68349 | 0.69 | 0.892375 |
Target: 5'- uGCCCAGAcguuGACGuCGUUGAGaaguCgCUCGg -3' miRNA: 3'- -CGGGUCUu---UUGC-GCAGCUCgu--G-GAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 76397 | 0.67 | 0.943007 |
Target: 5'- cGCCUcGAGGGCGUGgcacauaGGGCGCC-CGg -3' miRNA: 3'- -CGGGuCUUUUGCGCag-----CUCGUGGaGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 76693 | 0.69 | 0.905289 |
Target: 5'- uGCCCAGcuuGGCGCGgagCGcGGCGCaaCUCGc -3' miRNA: 3'- -CGGGUCuu-UUGCGCa--GC-UCGUG--GAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 76844 | 0.67 | 0.959351 |
Target: 5'- uGCCCAccGAGCGCGgcuuaguauaCGuGgACCUCGg -3' miRNA: 3'- -CGGGUcuUUUGCGCa---------GCuCgUGGAGC- -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 77054 | 0.67 | 0.951641 |
Target: 5'- aCCCGGAAGAgGCGcgCGAGCuACUa-- -3' miRNA: 3'- cGGGUCUUUUgCGCa-GCUCG-UGGagc -5' |
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24377 | 3' | -53.8 | NC_005264.1 | + | 82362 | 0.67 | 0.951641 |
Target: 5'- -gCCAGGcAGGCGCGUCGAuccgGUGCCgggCGc -3' miRNA: 3'- cgGGUCU-UUUGCGCAGCU----CGUGGa--GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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