Results 41 - 60 of 139 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24378 | 3' | -56.1 | NC_005264.1 | + | 37860 | 0.69 | 0.729946 |
Target: 5'- cGCGAAuGCGCCGCU--GCC-CUGCg- -3' miRNA: 3'- -UGCUUuUGCGGCGGaaCGGcGACGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 156886 | 0.69 | 0.729946 |
Target: 5'- cGCGAAuGCGCCGCU--GCC-CUGCg- -3' miRNA: 3'- -UGCUUuUGCGGCGGaaCGGcGACGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 16068 | 0.69 | 0.729946 |
Target: 5'- cCGAGAAcCGCCGCgcggcgCUUGCUGUUGC-Cg -3' miRNA: 3'- uGCUUUU-GCGGCG------GAACGGCGACGaG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 100373 | 0.69 | 0.7398 |
Target: 5'- cAUGggGcaAUGCUGCggaUGCCGCUGCUg -3' miRNA: 3'- -UGCuuU--UGCGGCGga-ACGGCGACGAg -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 121861 | 0.69 | 0.746641 |
Target: 5'- gGCGGAGggccggucgcgcucGCGCCGUCgc-CCGCUGCg- -3' miRNA: 3'- -UGCUUU--------------UGCGGCGGaacGGCGACGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 2835 | 0.69 | 0.746641 |
Target: 5'- gGCGGAGggccggucgcgcucGCGCCGUCgc-CCGCUGCg- -3' miRNA: 3'- -UGCUUU--------------UGCGGCGGaacGGCGACGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 2984 | 0.69 | 0.748587 |
Target: 5'- cACGAauccaucGAGCGCCGaCUggGCCGgCgGCUCg -3' miRNA: 3'- -UGCU-------UUUGCGGC-GGaaCGGC-GaCGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 46414 | 0.69 | 0.749559 |
Target: 5'- cGCGGccAGACGCCcCCagcgaccUGCCGCggGCUCa -3' miRNA: 3'- -UGCU--UUUGCGGcGGa------ACGGCGa-CGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 37119 | 0.69 | 0.749559 |
Target: 5'- gACGAGGGCgaggcgGCCGUCUcgGCCucGCUGCUg -3' miRNA: 3'- -UGCUUUUG------CGGCGGAa-CGG--CGACGAg -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 7570 | 0.69 | 0.749559 |
Target: 5'- uCGucccCGCCGCCUaccccgcGCCGCUGCg- -3' miRNA: 3'- uGCuuuuGCGGCGGAa------CGGCGACGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 156146 | 0.69 | 0.749559 |
Target: 5'- gACGAGGGCgaggcgGCCGUCUcgGCCucGCUGCUg -3' miRNA: 3'- -UGCUUUUG------CGGCGGAa-CGG--CGACGAg -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 50487 | 0.69 | 0.749559 |
Target: 5'- gAUGAGGACGUgGCCacgGCCGCgGC-Ca -3' miRNA: 3'- -UGCUUUUGCGgCGGaa-CGGCGaCGaG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 141997 | 0.69 | 0.759213 |
Target: 5'- cGCGc-AGCGCCGUCguaUGCCGCgGCa- -3' miRNA: 3'- -UGCuuUUGCGGCGGa--ACGGCGaCGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 95823 | 0.69 | 0.763044 |
Target: 5'- uGCGcAAGGcCGCCGCuccguccaggcagcaCUcGCCGUUGCUCg -3' miRNA: 3'- -UGC-UUUU-GCGGCG---------------GAaCGGCGACGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 80658 | 0.68 | 0.778171 |
Target: 5'- uACGAugGcCGCCGCCgaccgGCCGCacgGCa- -3' miRNA: 3'- -UGCUuuU-GCGGCGGaa---CGGCGa--CGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 43326 | 0.68 | 0.778171 |
Target: 5'- cGCGAGGGCuGCCGCCUcggagcacGCC-CUGCg- -3' miRNA: 3'- -UGCUUUUG-CGGCGGAa-------CGGcGACGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 16163 | 0.68 | 0.778171 |
Target: 5'- gGCGgcAAUGCCGCCcUGCgCGgaGgUCg -3' miRNA: 3'- -UGCuuUUGCGGCGGaACG-GCgaCgAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 64293 | 0.68 | 0.787456 |
Target: 5'- cCGAGuauCGCgGCCcacagcgcgUUGCCGCUGC-Ca -3' miRNA: 3'- uGCUUuu-GCGgCGG---------AACGGCGACGaG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 97685 | 0.68 | 0.787456 |
Target: 5'- -aGAGGGCGCCGCCgcGgUGUUGgUCa -3' miRNA: 3'- ugCUUUUGCGGCGGaaCgGCGACgAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 69966 | 0.68 | 0.796599 |
Target: 5'- -gGAAGACGCUaCCUUgGCgGCUGCg- -3' miRNA: 3'- ugCUUUUGCGGcGGAA-CGgCGACGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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