Results 21 - 40 of 139 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24378 | 3' | -56.1 | NC_005264.1 | + | 117437 | 0.71 | 0.638513 |
Target: 5'- cGCGcAGGGCGCCGCCcuccaucguUUGCCGCgccuuCUCc -3' miRNA: 3'- -UGC-UUUUGCGGCGG---------AACGGCGac---GAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 31027 | 0.71 | 0.638513 |
Target: 5'- gGCGAcgGUGCCGCCUagcggucgUGCgGCUGCg- -3' miRNA: 3'- -UGCUuuUGCGGCGGA--------ACGgCGACGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 114339 | 0.71 | 0.638513 |
Target: 5'- aACGAAGAcauCGUCaGCCUUGCCGC-GCa- -3' miRNA: 3'- -UGCUUUU---GCGG-CGGAACGGCGaCGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 150054 | 0.71 | 0.638513 |
Target: 5'- gGCGAcgGUGCCGCCUagcggucgUGCgGCUGCg- -3' miRNA: 3'- -UGCUuuUGCGGCGGA--------ACGgCGACGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 130989 | 0.71 | 0.648808 |
Target: 5'- gACGAGGucGCGCCcauGUCUUGCCGCgcgcgGCa- -3' miRNA: 3'- -UGCUUU--UGCGG---CGGAACGGCGa----CGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 59113 | 0.71 | 0.659089 |
Target: 5'- gGCGGc--CGCCGCCgcugaUGCCGCgccgccGCUCc -3' miRNA: 3'- -UGCUuuuGCGGCGGa----ACGGCGa-----CGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 13198 | 0.7 | 0.669348 |
Target: 5'- cGCGGAuccguCGCCGCCgccgucGCCggGCUGCUUc -3' miRNA: 3'- -UGCUUuu---GCGGCGGaa----CGG--CGACGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 132225 | 0.7 | 0.669348 |
Target: 5'- cGCGGAuccguCGCCGCCgccgucGCCggGCUGCUUc -3' miRNA: 3'- -UGCUUuu---GCGGCGGaa----CGG--CGACGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 19521 | 0.7 | 0.679577 |
Target: 5'- gACGAGAAgcucgggacggcCGCCGCCaacgUUGCCGgaGCg- -3' miRNA: 3'- -UGCUUUU------------GCGGCGG----AACGGCgaCGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 33235 | 0.7 | 0.689766 |
Target: 5'- uCGAGAAgcuuCGCCGCCgcGCCGCaGCg- -3' miRNA: 3'- uGCUUUU----GCGGCGGaaCGGCGaCGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 84824 | 0.7 | 0.699907 |
Target: 5'- aGCGAAGcuCGCCGUCaUGCaCGCaauucUGCUCg -3' miRNA: 3'- -UGCUUUu-GCGGCGGaACG-GCG-----ACGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 3741 | 0.7 | 0.699907 |
Target: 5'- gACGAGGAgcggggccucuUGCCGCCggGgCGCUGCg- -3' miRNA: 3'- -UGCUUUU-----------GCGGCGGaaCgGCGACGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 49907 | 0.7 | 0.699907 |
Target: 5'- -aGAGGAUGCCGCC--GCUGaaGCUCg -3' miRNA: 3'- ugCUUUUGCGGCGGaaCGGCgaCGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 122767 | 0.7 | 0.699907 |
Target: 5'- gACGAGGAgcggggccucuUGCCGCCggGgCGCUGCg- -3' miRNA: 3'- -UGCUUUU-----------GCGGCGGaaCgGCGACGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 127241 | 0.7 | 0.70999 |
Target: 5'- cACGGAGACGCgGCCaucggccgaaGCCGCagcaGCUCc -3' miRNA: 3'- -UGCUUUUGCGgCGGaa--------CGGCGa---CGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 8214 | 0.7 | 0.70999 |
Target: 5'- cACGGAGACGCgGCCaucggccgaaGCCGCagcaGCUCc -3' miRNA: 3'- -UGCUUUUGCGgCGGaa--------CGGCGa---CGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 153335 | 0.7 | 0.720006 |
Target: 5'- uCGAGGGCGCCgcGCCUgacGCUGgCUGaCUCg -3' miRNA: 3'- uGCUUUUGCGG--CGGAa--CGGC-GAC-GAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 34308 | 0.7 | 0.720006 |
Target: 5'- uCGAGGGCGCCgcGCCUgacGCUGgCUGaCUCg -3' miRNA: 3'- uGCUUUUGCGG--CGGAa--CGGC-GAC-GAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 145825 | 0.7 | 0.720006 |
Target: 5'- gACGAu--CGCCGCCuUUGCCGUcccugagucUGUUUg -3' miRNA: 3'- -UGCUuuuGCGGCGG-AACGGCG---------ACGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 107661 | 0.7 | 0.720006 |
Target: 5'- cGCGGu--CGCCGCCUUcaGCCGC-GCcCa -3' miRNA: 3'- -UGCUuuuGCGGCGGAA--CGGCGaCGaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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