miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24378 3' -56.1 NC_005264.1 + 51946 0.66 0.886172
Target:  5'- gGCGAGggUGCCGCUaacgcgucgugucgGCgCGCUcacGCUCg -3'
miRNA:   3'- -UGCUUuuGCGGCGGaa------------CG-GCGA---CGAG- -5'
24378 3' -56.1 NC_005264.1 + 128050 0.66 0.885478
Target:  5'- cGCGucGAugGCCGCCc-GCaugaGCgGCUCa -3'
miRNA:   3'- -UGCu-UUugCGGCGGaaCGg---CGaCGAG- -5'
24378 3' -56.1 NC_005264.1 + 113676 0.66 0.898915
Target:  5'- cCGAAAcuUGCCGCg--GCCGCUGUg- -3'
miRNA:   3'- uGCUUUu-GCGGCGgaaCGGCGACGag -5'
24378 3' -56.1 NC_005264.1 + 31459 0.66 0.905284
Target:  5'- gACGAGAGCGUCGCCgaugGgCGUggauggUGCg- -3'
miRNA:   3'- -UGCUUUUGCGGCGGaa--CgGCG------ACGag -5'
24378 3' -56.1 NC_005264.1 + 46924 0.66 0.877698
Target:  5'- uAUGGucuCGCCGCucgucucCUUGgCGUUGCUCa -3'
miRNA:   3'- -UGCUuuuGCGGCG-------GAACgGCGACGAG- -5'
24378 3' -56.1 NC_005264.1 + 7959 0.66 0.878417
Target:  5'- gGCGucuuuguCGCUGCCUagagGUCGUUGCUUu -3'
miRNA:   3'- -UGCuuuu---GCGGCGGAa---CGGCGACGAG- -5'
24378 3' -56.1 NC_005264.1 + 23308 0.66 0.878417
Target:  5'- cGCGAu--CG-UGCCcaUGCUGCUGCUCc -3'
miRNA:   3'- -UGCUuuuGCgGCGGa-ACGGCGACGAG- -5'
24378 3' -56.1 NC_005264.1 + 64430 0.66 0.878417
Target:  5'- cACGgcGAUGaCGUC-UGCCGCgGCUCu -3'
miRNA:   3'- -UGCuuUUGCgGCGGaACGGCGaCGAG- -5'
24378 3' -56.1 NC_005264.1 + 118960 0.66 0.885478
Target:  5'- ----cGGCGCCcCCuUUGCCGC-GCUCg -3'
miRNA:   3'- ugcuuUUGCGGcGG-AACGGCGaCGAG- -5'
24378 3' -56.1 NC_005264.1 + 21 0.66 0.885478
Target:  5'- cACGccauAACGCCGCg--GCCcuaGCUGUUCg -3'
miRNA:   3'- -UGCuu--UUGCGGCGgaaCGG---CGACGAG- -5'
24378 3' -56.1 NC_005264.1 + 46418 0.66 0.885478
Target:  5'- cGCGAGGcugcACGCCGCC---CUGC-GCUCg -3'
miRNA:   3'- -UGCUUU----UGCGGCGGaacGGCGaCGAG- -5'
24378 3' -56.1 NC_005264.1 + 54912 0.66 0.898915
Target:  5'- cGCGAAGgucgcgGCGCUGCUggcgaacgGCUGCgagugGCUCc -3'
miRNA:   3'- -UGCUUU------UGCGGCGGaa------CGGCGa----CGAG- -5'
24378 3' -56.1 NC_005264.1 + 129484 0.67 0.851195
Target:  5'- aGCGGAu-CGCCGCCgauagGCCGgaucccggucggaacCUGCUa -3'
miRNA:   3'- -UGCUUuuGCGGCGGaa---CGGC---------------GACGAg -5'
24378 3' -56.1 NC_005264.1 + 45891 0.67 0.854354
Target:  5'- cACGAAcuucaguguauuGCGCCGCCgcgGCaauCUGCUCc -3'
miRNA:   3'- -UGCUUu-----------UGCGGCGGaa-CGgc-GACGAG- -5'
24378 3' -56.1 NC_005264.1 + 86802 0.67 0.855921
Target:  5'- aACGggGACauuCCGC--UGCCGCUGUg- -3'
miRNA:   3'- -UGCuuUUGc--GGCGgaACGGCGACGag -5'
24378 3' -56.1 NC_005264.1 + 24630 0.67 0.871134
Target:  5'- aGCGAcuGCgguugucguuugGCCGCCUUGUCuCUGCa- -3'
miRNA:   3'- -UGCUuuUG------------CGGCGGAACGGcGACGag -5'
24378 3' -56.1 NC_005264.1 + 22137 0.67 0.862871
Target:  5'- aACGAGcgcGACGCgCGCCUUagauugcGCCGCggGC-Cg -3'
miRNA:   3'- -UGCUU---UUGCG-GCGGAA-------CGGCGa-CGaG- -5'
24378 3' -56.1 NC_005264.1 + 79308 0.67 0.868906
Target:  5'- uGCGggGucaugucgcuCGCCGCaUUUGCgugcguagcgugcgCGCUGCUCu -3'
miRNA:   3'- -UGCuuUu---------GCGGCG-GAACG--------------GCGACGAG- -5'
24378 3' -56.1 NC_005264.1 + 129582 0.67 0.871134
Target:  5'- cGCGGAu-CG-CGCgUUcGCCGCUGCUUc -3'
miRNA:   3'- -UGCUUuuGCgGCGgAA-CGGCGACGAG- -5'
24378 3' -56.1 NC_005264.1 + 160218 0.67 0.848004
Target:  5'- -aGAAGACuCCGCCccGCCuGCUcgGCUCg -3'
miRNA:   3'- ugCUUUUGcGGCGGaaCGG-CGA--CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.