miRNA display CGI


Results 21 - 40 of 139 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24378 3' -56.1 NC_005264.1 + 17290 0.66 0.905908
Target:  5'- gGCGGAGG-GCUGCCcaucuaacugaaugGUCGCUGCUUc -3'
miRNA:   3'- -UGCUUUUgCGGCGGaa------------CGGCGACGAG- -5'
24378 3' -56.1 NC_005264.1 + 17681 0.67 0.855921
Target:  5'- ---cAGGCGCaGCCgagGCCGCggcgGCUCg -3'
miRNA:   3'- ugcuUUUGCGgCGGaa-CGGCGa---CGAG- -5'
24378 3' -56.1 NC_005264.1 + 19521 0.7 0.679577
Target:  5'- gACGAGAAgcucgggacggcCGCCGCCaacgUUGCCGgaGCg- -3'
miRNA:   3'- -UGCUUUU------------GCGGCGG----AACGGCgaCGag -5'
24378 3' -56.1 NC_005264.1 + 22137 0.67 0.862871
Target:  5'- aACGAGcgcGACGCgCGCCUUagauugcGCCGCggGC-Cg -3'
miRNA:   3'- -UGCUU---UUGCG-GCGGAA-------CGGCGa-CGaG- -5'
24378 3' -56.1 NC_005264.1 + 23308 0.66 0.878417
Target:  5'- cGCGAu--CG-UGCCcaUGCUGCUGCUCc -3'
miRNA:   3'- -UGCUuuuGCgGCGGa-ACGGCGACGAG- -5'
24378 3' -56.1 NC_005264.1 + 23697 0.67 0.842344
Target:  5'- uGCGGGAACGCCgaccgacccucaacGCCcaaagggcacacGCCGCcGCUCa -3'
miRNA:   3'- -UGCUUUUGCGG--------------CGGaa----------CGGCGaCGAG- -5'
24378 3' -56.1 NC_005264.1 + 24630 0.67 0.871134
Target:  5'- aGCGAcuGCgguugucguuugGCCGCCUUGUCuCUGCa- -3'
miRNA:   3'- -UGCUuuUG------------CGGCGGAACGGcGACGag -5'
24378 3' -56.1 NC_005264.1 + 27981 0.66 0.905284
Target:  5'- gUGAcGACGaCCGCCguaGCCGCgGCcCa -3'
miRNA:   3'- uGCUuUUGC-GGCGGaa-CGGCGaCGaG- -5'
24378 3' -56.1 NC_005264.1 + 31027 0.71 0.638513
Target:  5'- gGCGAcgGUGCCGCCUagcggucgUGCgGCUGCg- -3'
miRNA:   3'- -UGCUuuUGCGGCGGA--------ACGgCGACGag -5'
24378 3' -56.1 NC_005264.1 + 31459 0.66 0.905284
Target:  5'- gACGAGAGCGUCGCCgaugGgCGUggauggUGCg- -3'
miRNA:   3'- -UGCUUUUGCGGCGGaa--CgGCG------ACGag -5'
24378 3' -56.1 NC_005264.1 + 31875 0.72 0.607631
Target:  5'- cGCGGucGGCGCaCGCCUUGUCGaUGCUg -3'
miRNA:   3'- -UGCUu-UUGCG-GCGGAACGGCgACGAg -5'
24378 3' -56.1 NC_005264.1 + 33235 0.7 0.689766
Target:  5'- uCGAGAAgcuuCGCCGCCgcGCCGCaGCg- -3'
miRNA:   3'- uGCUUUU----GCGGCGGaaCGGCGaCGag -5'
24378 3' -56.1 NC_005264.1 + 33903 0.82 0.164169
Target:  5'- cGCGAGAuaGCGCCGCCUuucUGCCGCcagGCUg -3'
miRNA:   3'- -UGCUUU--UGCGGCGGA---ACGGCGa--CGAg -5'
24378 3' -56.1 NC_005264.1 + 34308 0.7 0.720006
Target:  5'- uCGAGGGCGCCgcGCCUgacGCUGgCUGaCUCg -3'
miRNA:   3'- uGCUUUUGCGG--CGGAa--CGGC-GAC-GAG- -5'
24378 3' -56.1 NC_005264.1 + 36750 0.68 0.823092
Target:  5'- cGCGAcgGCGCCgGCCggcGCCGUcgccGCUUg -3'
miRNA:   3'- -UGCUuuUGCGG-CGGaa-CGGCGa---CGAG- -5'
24378 3' -56.1 NC_005264.1 + 37119 0.69 0.749559
Target:  5'- gACGAGGGCgaggcgGCCGUCUcgGCCucGCUGCUg -3'
miRNA:   3'- -UGCUUUUG------CGGCGGAa-CGG--CGACGAg -5'
24378 3' -56.1 NC_005264.1 + 37860 0.69 0.729946
Target:  5'- cGCGAAuGCGCCGCU--GCC-CUGCg- -3'
miRNA:   3'- -UGCUUuUGCGGCGGaaCGGcGACGag -5'
24378 3' -56.1 NC_005264.1 + 38094 0.67 0.861341
Target:  5'- aACGGAGAgaggauuuguuuucCGCCGCCaggcgUUGcCCGCgcGCUCu -3'
miRNA:   3'- -UGCUUUU--------------GCGGCGG-----AAC-GGCGa-CGAG- -5'
24378 3' -56.1 NC_005264.1 + 38351 0.73 0.526598
Target:  5'- gGCGGAGGCuGCCGCUUUuucucGCCGCUuccgcaccucGCUCu -3'
miRNA:   3'- -UGCUUUUG-CGGCGGAA-----CGGCGA----------CGAG- -5'
24378 3' -56.1 NC_005264.1 + 38384 0.66 0.905284
Target:  5'- gGCGAGAGCGgcgaCGCCgagacagaUGCCGCguacgcccUGCUg -3'
miRNA:   3'- -UGCUUUUGCg---GCGGa-------ACGGCG--------ACGAg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.