miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24378 3' -56.1 NC_005264.1 + 21 0.66 0.885478
Target:  5'- cACGccauAACGCCGCg--GCCcuaGCUGUUCg -3'
miRNA:   3'- -UGCuu--UUGCGGCGgaaCGG---CGACGAG- -5'
24378 3' -56.1 NC_005264.1 + 2835 0.69 0.746641
Target:  5'- gGCGGAGggccggucgcgcucGCGCCGUCgc-CCGCUGCg- -3'
miRNA:   3'- -UGCUUU--------------UGCGGCGGaacGGCGACGag -5'
24378 3' -56.1 NC_005264.1 + 2984 0.69 0.748587
Target:  5'- cACGAauccaucGAGCGCCGaCUggGCCGgCgGCUCg -3'
miRNA:   3'- -UGCU-------UUUGCGGC-GGaaCGGC-GaCGAG- -5'
24378 3' -56.1 NC_005264.1 + 3697 0.66 0.905284
Target:  5'- cGCGGAAaggGCGCacaGUaCUUGCCGCgggcggGCUUc -3'
miRNA:   3'- -UGCUUU---UGCGg--CG-GAACGGCGa-----CGAG- -5'
24378 3' -56.1 NC_005264.1 + 3741 0.7 0.699907
Target:  5'- gACGAGGAgcggggccucuUGCCGCCggGgCGCUGCg- -3'
miRNA:   3'- -UGCUUUU-----------GCGGCGGaaCgGCGACGag -5'
24378 3' -56.1 NC_005264.1 + 4618 0.67 0.848004
Target:  5'- gGCGuAGGCGCguucucgaaaauCGCCggGCCGCUuCUCg -3'
miRNA:   3'- -UGCuUUUGCG------------GCGGaaCGGCGAcGAG- -5'
24378 3' -56.1 NC_005264.1 + 5145 0.68 0.814426
Target:  5'- gACGggGGCGUCGCCgucgucGUCGgUGC-Cg -3'
miRNA:   3'- -UGCuuUUGCGGCGGaa----CGGCgACGaG- -5'
24378 3' -56.1 NC_005264.1 + 6414 0.67 0.831582
Target:  5'- gGCGAucacCGCCGCCa-GCCGCagGCa- -3'
miRNA:   3'- -UGCUuuu-GCGGCGGaaCGGCGa-CGag -5'
24378 3' -56.1 NC_005264.1 + 7060 0.68 0.805592
Target:  5'- gGCGAcgGCGCCgGCCggcGCCGUcGCg- -3'
miRNA:   3'- -UGCUuuUGCGG-CGGaa-CGGCGaCGag -5'
24378 3' -56.1 NC_005264.1 + 7570 0.69 0.749559
Target:  5'- uCGucccCGCCGCCUaccccgcGCCGCUGCg- -3'
miRNA:   3'- uGCuuuuGCGGCGGAa------CGGCGACGag -5'
24378 3' -56.1 NC_005264.1 + 7646 0.75 0.440795
Target:  5'- cACG-AAACGCCGCC-UGCCgGCUcggaggGCUCg -3'
miRNA:   3'- -UGCuUUUGCGGCGGaACGG-CGA------CGAG- -5'
24378 3' -56.1 NC_005264.1 + 7959 0.66 0.878417
Target:  5'- gGCGucuuuguCGCUGCCUagagGUCGUUGCUUu -3'
miRNA:   3'- -UGCuuuu---GCGGCGGAa---CGGCGACGAG- -5'
24378 3' -56.1 NC_005264.1 + 8214 0.7 0.70999
Target:  5'- cACGGAGACGCgGCCaucggccgaaGCCGCagcaGCUCc -3'
miRNA:   3'- -UGCUUUUGCGgCGGaa--------CGGCGa---CGAG- -5'
24378 3' -56.1 NC_005264.1 + 10457 0.67 0.851195
Target:  5'- aGCGGAu-CGCCGCCgauagGCCGgaucccggucggaacCUGCUa -3'
miRNA:   3'- -UGCUUuuGCGGCGGaa---CGGC---------------GACGAg -5'
24378 3' -56.1 NC_005264.1 + 10555 0.67 0.871134
Target:  5'- cGCGGAu-CG-CGCgUUcGCCGCUGCUUc -3'
miRNA:   3'- -UGCUUuuGCgGCGgAA-CGGCGACGAG- -5'
24378 3' -56.1 NC_005264.1 + 11963 0.72 0.607631
Target:  5'- gACGAGGucGCGCCauGUCUUGCCGCgcgcgGCa- -3'
miRNA:   3'- -UGCUUU--UGCGG--CGGAACGGCGa----CGag -5'
24378 3' -56.1 NC_005264.1 + 12209 0.67 0.831582
Target:  5'- gGCGAugcGCGCCGCCUcGCCagagaGCaGaCUCg -3'
miRNA:   3'- -UGCUuu-UGCGGCGGAaCGG-----CGaC-GAG- -5'
24378 3' -56.1 NC_005264.1 + 13198 0.7 0.669348
Target:  5'- cGCGGAuccguCGCCGCCgccgucGCCggGCUGCUUc -3'
miRNA:   3'- -UGCUUuu---GCGGCGGaa----CGG--CGACGAG- -5'
24378 3' -56.1 NC_005264.1 + 16068 0.69 0.729946
Target:  5'- cCGAGAAcCGCCGCgcggcgCUUGCUGUUGC-Cg -3'
miRNA:   3'- uGCUUUU-GCGGCG------GAACGGCGACGaG- -5'
24378 3' -56.1 NC_005264.1 + 16163 0.68 0.778171
Target:  5'- gGCGgcAAUGCCGCCcUGCgCGgaGgUCg -3'
miRNA:   3'- -UGCuuUUGCGGCGGaACG-GCgaCgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.