miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24378 3' -56.1 NC_005264.1 + 160218 0.67 0.848004
Target:  5'- -aGAAGACuCCGCCccGCCuGCUcgGCUCg -3'
miRNA:   3'- ugCUUUUGcGGCGGaaCGG-CGA--CGAG- -5'
24378 3' -56.1 NC_005264.1 + 159423 0.67 0.839889
Target:  5'- gUGggGcGCGCCGCCUUccaugGUCGUUccGCUCa -3'
miRNA:   3'- uGCuuU-UGCGGCGGAA-----CGGCGA--CGAG- -5'
24378 3' -56.1 NC_005264.1 + 159294 0.73 0.516722
Target:  5'- cACGAGagaugcugGACGCCGCCgcGUCGCgGUUCg -3'
miRNA:   3'- -UGCUU--------UUGCGGCGGaaCGGCGaCGAG- -5'
24378 3' -56.1 NC_005264.1 + 158791 0.67 0.866659
Target:  5'- gACGAAGAggaggaccaauuauuCGCCgagGCCUUGCCcCcGCUCu -3'
miRNA:   3'- -UGCUUUU---------------GCGG---CGGAACGGcGaCGAG- -5'
24378 3' -56.1 NC_005264.1 + 158228 0.68 0.814426
Target:  5'- uCGAGAACG-CGCCUacGCCGCcGCg- -3'
miRNA:   3'- uGCUUUUGCgGCGGAa-CGGCGaCGag -5'
24378 3' -56.1 NC_005264.1 + 157411 0.66 0.905284
Target:  5'- gGCGAGAGCGgcgaCGCCgagacagaUGCCGCguacgcccUGCUg -3'
miRNA:   3'- -UGCUUUUGCg---GCGGa-------ACGGCG--------ACGAg -5'
24378 3' -56.1 NC_005264.1 + 157121 0.67 0.861341
Target:  5'- aACGGAGAgaggauuuguuuucCGCCGCCaggcgUUGcCCGCgcGCUCu -3'
miRNA:   3'- -UGCUUUU--------------GCGGCGG-----AAC-GGCGa-CGAG- -5'
24378 3' -56.1 NC_005264.1 + 156886 0.69 0.729946
Target:  5'- cGCGAAuGCGCCGCU--GCC-CUGCg- -3'
miRNA:   3'- -UGCUUuUGCGGCGGaaCGGcGACGag -5'
24378 3' -56.1 NC_005264.1 + 156146 0.69 0.749559
Target:  5'- gACGAGGGCgaggcgGCCGUCUcgGCCucGCUGCUg -3'
miRNA:   3'- -UGCUUUUG------CGGCGGAa-CGG--CGACGAg -5'
24378 3' -56.1 NC_005264.1 + 155776 0.68 0.823092
Target:  5'- cGCGAcgGCGCCgGCCggcGCCGUcgccGCUUg -3'
miRNA:   3'- -UGCUuuUGCGG-CGGaa-CGGCGa---CGAG- -5'
24378 3' -56.1 NC_005264.1 + 155475 0.67 0.830742
Target:  5'- aAUGAAAACcgcggcgGCCGCCagauuUUGCCGgUGCg- -3'
miRNA:   3'- -UGCUUUUG-------CGGCGG-----AACGGCgACGag -5'
24378 3' -56.1 NC_005264.1 + 153335 0.7 0.720006
Target:  5'- uCGAGGGCGCCgcGCCUgacGCUGgCUGaCUCg -3'
miRNA:   3'- uGCUUUUGCGG--CGGAa--CGGC-GAC-GAG- -5'
24378 3' -56.1 NC_005264.1 + 152929 0.81 0.181745
Target:  5'- cGCGAGAuaGCGCCGCCUuucUGCCGCcaggGCUg -3'
miRNA:   3'- -UGCUUU--UGCGGCGGA---ACGGCGa---CGAg -5'
24378 3' -56.1 NC_005264.1 + 150486 0.66 0.905284
Target:  5'- gACGAGAGCGUCGCCgaugGgCGUggauggUGCg- -3'
miRNA:   3'- -UGCUUUUGCGGCGGaa--CgGCG------ACGag -5'
24378 3' -56.1 NC_005264.1 + 150054 0.71 0.638513
Target:  5'- gGCGAcgGUGCCGCCUagcggucgUGCgGCUGCg- -3'
miRNA:   3'- -UGCUuuUGCGGCGGA--------ACGgCGACGag -5'
24378 3' -56.1 NC_005264.1 + 147560 0.66 0.905284
Target:  5'- cGCGAAGugGCCGCCga--CGUgUGCg- -3'
miRNA:   3'- -UGCUUUugCGGCGGaacgGCG-ACGag -5'
24378 3' -56.1 NC_005264.1 + 147527 0.72 0.566745
Target:  5'- cCGAAGACuugGCCGCCaucaugguacccUUGCCGUUGCg- -3'
miRNA:   3'- uGCUUUUG---CGGCGG------------AACGGCGACGag -5'
24378 3' -56.1 NC_005264.1 + 145825 0.7 0.720006
Target:  5'- gACGAu--CGCCGCCuUUGCCGUcccugagucUGUUUg -3'
miRNA:   3'- -UGCUuuuGCGGCGG-AACGGCG---------ACGAG- -5'
24378 3' -56.1 NC_005264.1 + 145480 0.68 0.805592
Target:  5'- -aGAccGCGCCGCCgccagcUGCCGCggaagGCa- -3'
miRNA:   3'- ugCUuuUGCGGCGGa-----ACGGCGa----CGag -5'
24378 3' -56.1 NC_005264.1 + 141997 0.69 0.759213
Target:  5'- cGCGc-AGCGCCGUCguaUGCCGCgGCa- -3'
miRNA:   3'- -UGCuuUUGCGGCGGa--ACGGCGaCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.