Results 1 - 20 of 139 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24378 | 3' | -56.1 | NC_005264.1 | + | 126359 | 1.08 | 0.003004 |
Target: 5'- cACGAAAACGCCGCCUUGCCGCUGCUCc -3' miRNA: 3'- -UGCUUUUGCGGCGGAACGGCGACGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 33903 | 0.82 | 0.164169 |
Target: 5'- cGCGAGAuaGCGCCGCCUuucUGCCGCcagGCUg -3' miRNA: 3'- -UGCUUU--UGCGGCGGA---ACGGCGa--CGAg -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 152929 | 0.81 | 0.181745 |
Target: 5'- cGCGAGAuaGCGCCGCCUuucUGCCGCcaggGCUg -3' miRNA: 3'- -UGCUUU--UGCGGCGGA---ACGGCGa---CGAg -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 138420 | 0.77 | 0.310208 |
Target: 5'- gGCGAGAACG-UGCUUUGCgucgCGCUGCUCg -3' miRNA: 3'- -UGCUUUUGCgGCGGAACG----GCGACGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 69821 | 0.77 | 0.339907 |
Target: 5'- cGCGGAcGACGCCGCCggggugaagGCCGCccUGCUUg -3' miRNA: 3'- -UGCUU-UUGCGGCGGaa-------CGGCG--ACGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 105532 | 0.75 | 0.422811 |
Target: 5'- uGCGGAuGCGaUCGCUgagUGCCGCUaGCUCa -3' miRNA: 3'- -UGCUUuUGC-GGCGGa--ACGGCGA-CGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 7646 | 0.75 | 0.440795 |
Target: 5'- cACG-AAACGCCGCC-UGCCgGCUcggaggGCUCg -3' miRNA: 3'- -UGCuUUUGCGGCGGaACGG-CGA------CGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 126673 | 0.75 | 0.440795 |
Target: 5'- cACG-AAACGCCGCC-UGCCgGCUcggaggGCUCg -3' miRNA: 3'- -UGCuUUUGCGGCGGaACGG-CGA------CGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 85613 | 0.74 | 0.487564 |
Target: 5'- -gGAAAGCuCCGCCgaUGCCGUUGCUg -3' miRNA: 3'- ugCUUUUGcGGCGGa-ACGGCGACGAg -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 104963 | 0.73 | 0.516722 |
Target: 5'- cGCGccAugGCCGCCggUGCCGCcGuCUCu -3' miRNA: 3'- -UGCuuUugCGGCGGa-ACGGCGaC-GAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 40267 | 0.73 | 0.516722 |
Target: 5'- cACGAGagaugcugGACGCCGCCgcGUCGCgGUUCg -3' miRNA: 3'- -UGCUU--------UUGCGGCGGaaCGGCGaCGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 159294 | 0.73 | 0.516722 |
Target: 5'- cACGAGagaugcugGACGCCGCCgcGUCGCgGUUCg -3' miRNA: 3'- -UGCUU--------UUGCGGCGGaaCGGCGaCGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 38351 | 0.73 | 0.526598 |
Target: 5'- gGCGGAGGCuGCCGCUUUuucucGCCGCUuccgcaccucGCUCu -3' miRNA: 3'- -UGCUUUUG-CGGCGGAA-----CGGCGA----------CGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 139064 | 0.73 | 0.546554 |
Target: 5'- cGCGGAGGCGCCGguuCCUUGCUGUcGCc- -3' miRNA: 3'- -UGCUUUUGCGGC---GGAACGGCGaCGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 147527 | 0.72 | 0.566745 |
Target: 5'- cCGAAGACuugGCCGCCaucaugguacccUUGCCGUUGCg- -3' miRNA: 3'- uGCUUUUG---CGGCGG------------AACGGCGACGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 11963 | 0.72 | 0.607631 |
Target: 5'- gACGAGGucGCGCCauGUCUUGCCGCgcgcgGCa- -3' miRNA: 3'- -UGCUUU--UGCGG--CGGAACGGCGa----CGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 31875 | 0.72 | 0.607631 |
Target: 5'- cGCGGucGGCGCaCGCCUUGUCGaUGCUg -3' miRNA: 3'- -UGCUu-UUGCG-GCGGAACGGCgACGAg -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 137956 | 0.72 | 0.607631 |
Target: 5'- uACGaAGAGCGaaGCCUcgUGCCGCcccgGCUCc -3' miRNA: 3'- -UGC-UUUUGCggCGGA--ACGGCGa---CGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 94724 | 0.71 | 0.628213 |
Target: 5'- cCGAguauGAGCG-CGCCUUGUCGCUGUa- -3' miRNA: 3'- uGCU----UUUGCgGCGGAACGGCGACGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 83710 | 0.71 | 0.637483 |
Target: 5'- cACGGAGaaggggcaagcgcACGCCGCCgUGCCGa-GCUUa -3' miRNA: 3'- -UGCUUU-------------UGCGGCGGaACGGCgaCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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