miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24378 3' -56.1 NC_005264.1 + 153335 0.7 0.720006
Target:  5'- uCGAGGGCGCCgcGCCUgacGCUGgCUGaCUCg -3'
miRNA:   3'- uGCUUUUGCGG--CGGAa--CGGC-GAC-GAG- -5'
24378 3' -56.1 NC_005264.1 + 117437 0.71 0.638513
Target:  5'- cGCGcAGGGCGCCGCCcuccaucguUUGCCGCgccuuCUCc -3'
miRNA:   3'- -UGC-UUUUGCGGCGG---------AACGGCGac---GAG- -5'
24378 3' -56.1 NC_005264.1 + 130989 0.71 0.648808
Target:  5'- gACGAGGucGCGCCcauGUCUUGCCGCgcgcgGCa- -3'
miRNA:   3'- -UGCUUU--UGCGG---CGGAACGGCGa----CGag -5'
24378 3' -56.1 NC_005264.1 + 59113 0.71 0.659089
Target:  5'- gGCGGc--CGCCGCCgcugaUGCCGCgccgccGCUCc -3'
miRNA:   3'- -UGCUuuuGCGGCGGa----ACGGCGa-----CGAG- -5'
24378 3' -56.1 NC_005264.1 + 132225 0.7 0.669348
Target:  5'- cGCGGAuccguCGCCGCCgccgucGCCggGCUGCUUc -3'
miRNA:   3'- -UGCUUuu---GCGGCGGaa----CGG--CGACGAG- -5'
24378 3' -56.1 NC_005264.1 + 19521 0.7 0.679577
Target:  5'- gACGAGAAgcucgggacggcCGCCGCCaacgUUGCCGgaGCg- -3'
miRNA:   3'- -UGCUUUU------------GCGGCGG----AACGGCgaCGag -5'
24378 3' -56.1 NC_005264.1 + 33235 0.7 0.689766
Target:  5'- uCGAGAAgcuuCGCCGCCgcGCCGCaGCg- -3'
miRNA:   3'- uGCUUUU----GCGGCGGaaCGGCGaCGag -5'
24378 3' -56.1 NC_005264.1 + 122767 0.7 0.699907
Target:  5'- gACGAGGAgcggggccucuUGCCGCCggGgCGCUGCg- -3'
miRNA:   3'- -UGCUUUU-----------GCGGCGGaaCgGCGACGag -5'
24378 3' -56.1 NC_005264.1 + 127241 0.7 0.70999
Target:  5'- cACGGAGACGCgGCCaucggccgaaGCCGCagcaGCUCc -3'
miRNA:   3'- -UGCUUUUGCGgCGGaa--------CGGCGa---CGAG- -5'
24378 3' -56.1 NC_005264.1 + 114339 0.71 0.638513
Target:  5'- aACGAAGAcauCGUCaGCCUUGCCGC-GCa- -3'
miRNA:   3'- -UGCUUUU---GCGG-CGGAACGGCGaCGag -5'
24378 3' -56.1 NC_005264.1 + 150054 0.71 0.638513
Target:  5'- gGCGAcgGUGCCGCCUagcggucgUGCgGCUGCg- -3'
miRNA:   3'- -UGCUuuUGCGGCGGA--------ACGgCGACGag -5'
24378 3' -56.1 NC_005264.1 + 31875 0.72 0.607631
Target:  5'- cGCGGucGGCGCaCGCCUUGUCGaUGCUg -3'
miRNA:   3'- -UGCUu-UUGCG-GCGGAACGGCgACGAg -5'
24378 3' -56.1 NC_005264.1 + 138420 0.77 0.310208
Target:  5'- gGCGAGAACG-UGCUUUGCgucgCGCUGCUCg -3'
miRNA:   3'- -UGCUUUUGCgGCGGAACG----GCGACGAG- -5'
24378 3' -56.1 NC_005264.1 + 69821 0.77 0.339907
Target:  5'- cGCGGAcGACGCCGCCggggugaagGCCGCccUGCUUg -3'
miRNA:   3'- -UGCUU-UUGCGGCGGaa-------CGGCG--ACGAG- -5'
24378 3' -56.1 NC_005264.1 + 105532 0.75 0.422811
Target:  5'- uGCGGAuGCGaUCGCUgagUGCCGCUaGCUCa -3'
miRNA:   3'- -UGCUUuUGC-GGCGGa--ACGGCGA-CGAG- -5'
24378 3' -56.1 NC_005264.1 + 126673 0.75 0.440795
Target:  5'- cACG-AAACGCCGCC-UGCCgGCUcggaggGCUCg -3'
miRNA:   3'- -UGCuUUUGCGGCGGaACGG-CGA------CGAG- -5'
24378 3' -56.1 NC_005264.1 + 85613 0.74 0.487564
Target:  5'- -gGAAAGCuCCGCCgaUGCCGUUGCUg -3'
miRNA:   3'- ugCUUUUGcGGCGGa-ACGGCGACGAg -5'
24378 3' -56.1 NC_005264.1 + 104963 0.73 0.516722
Target:  5'- cGCGccAugGCCGCCggUGCCGCcGuCUCu -3'
miRNA:   3'- -UGCuuUugCGGCGGa-ACGGCGaC-GAG- -5'
24378 3' -56.1 NC_005264.1 + 159294 0.73 0.516722
Target:  5'- cACGAGagaugcugGACGCCGCCgcGUCGCgGUUCg -3'
miRNA:   3'- -UGCUU--------UUGCGGCGGaaCGGCGaCGAG- -5'
24378 3' -56.1 NC_005264.1 + 38351 0.73 0.526598
Target:  5'- gGCGGAGGCuGCCGCUUUuucucGCCGCUuccgcaccucGCUCu -3'
miRNA:   3'- -UGCUUUUG-CGGCGGAA-----CGGCGA----------CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.