miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24378 3' -56.1 NC_005264.1 + 123718 0.65 0.9096
Target:  5'- gGCGAGuGGCGCCGCguccacgacagcagCUggucagacGCCGCUGCcCg -3'
miRNA:   3'- -UGCUU-UUGCGGCG--------------GAa-------CGGCGACGaG- -5'
24378 3' -56.1 NC_005264.1 + 46418 0.66 0.885478
Target:  5'- cGCGAGGcugcACGCCGCC---CUGC-GCUCg -3'
miRNA:   3'- -UGCUUU----UGCGGCGGaacGGCGaCGAG- -5'
24378 3' -56.1 NC_005264.1 + 7959 0.66 0.878417
Target:  5'- gGCGucuuuguCGCUGCCUagagGUCGUUGCUUu -3'
miRNA:   3'- -UGCuuuu---GCGGCGGAa---CGGCGACGAG- -5'
24378 3' -56.1 NC_005264.1 + 136439 0.66 0.892312
Target:  5'- gGCGGAagagcAugGgCGCUgagGCCGC-GCUCa -3'
miRNA:   3'- -UGCUU-----UugCgGCGGaa-CGGCGaCGAG- -5'
24378 3' -56.1 NC_005264.1 + 104339 0.66 0.892312
Target:  5'- cCGAGGACGCaccgCGCuCUUGCgCGCaUGCg- -3'
miRNA:   3'- uGCUUUUGCG----GCG-GAACG-GCG-ACGag -5'
24378 3' -56.1 NC_005264.1 + 71336 0.66 0.892312
Target:  5'- cGCGGcauucuACGCCGCCgaaaccCCGCagcgGCUCu -3'
miRNA:   3'- -UGCUuu----UGCGGCGGaac---GGCGa---CGAG- -5'
24378 3' -56.1 NC_005264.1 + 51059 0.66 0.904657
Target:  5'- uUGucGACGUCGCCUcuagGCCGCcuagaccUGCUUc -3'
miRNA:   3'- uGCuuUUGCGGCGGAa---CGGCG-------ACGAG- -5'
24378 3' -56.1 NC_005264.1 + 3697 0.66 0.905284
Target:  5'- cGCGGAAaggGCGCacaGUaCUUGCCGCgggcggGCUUc -3'
miRNA:   3'- -UGCUUU---UGCGg--CG-GAACGGCGa-----CGAG- -5'
24378 3' -56.1 NC_005264.1 + 21 0.66 0.885478
Target:  5'- cACGccauAACGCCGCg--GCCcuaGCUGUUCg -3'
miRNA:   3'- -UGCuu--UUGCGGCGgaaCGG---CGACGAG- -5'
24378 3' -56.1 NC_005264.1 + 64430 0.66 0.878417
Target:  5'- cACGgcGAUGaCGUC-UGCCGCgGCUCu -3'
miRNA:   3'- -UGCuuUUGCgGCGGaACGGCGaCGAG- -5'
24378 3' -56.1 NC_005264.1 + 46924 0.66 0.877698
Target:  5'- uAUGGucuCGCCGCucgucucCUUGgCGUUGCUCa -3'
miRNA:   3'- -UGCUuuuGCGGCG-------GAACgGCGACGAG- -5'
24378 3' -56.1 NC_005264.1 + 59998 0.66 0.898915
Target:  5'- aGCGAGAcgGCCGCgUgGCCGCgGCcCa -3'
miRNA:   3'- -UGCUUUugCGGCGgAaCGGCGaCGaG- -5'
24378 3' -56.1 NC_005264.1 + 147560 0.66 0.905284
Target:  5'- cGCGAAGugGCCGCCga--CGUgUGCg- -3'
miRNA:   3'- -UGCUUUugCGGCGGaacgGCG-ACGag -5'
24378 3' -56.1 NC_005264.1 + 43413 0.66 0.898915
Target:  5'- aGCGAGAuCGcCCGCCa-GCCGCgagUGCa- -3'
miRNA:   3'- -UGCUUUuGC-GGCGGaaCGGCG---ACGag -5'
24378 3' -56.1 NC_005264.1 + 69603 0.66 0.905284
Target:  5'- gACGAGGGCGCCGCCcggcgUGagaaCGacagGCUa -3'
miRNA:   3'- -UGCUUUUGCGGCGGa----ACg---GCga--CGAg -5'
24378 3' -56.1 NC_005264.1 + 51946 0.66 0.886172
Target:  5'- gGCGAGggUGCCGCUaacgcgucgugucgGCgCGCUcacGCUCg -3'
miRNA:   3'- -UGCUUuuGCGGCGGaa------------CG-GCGA---CGAG- -5'
24378 3' -56.1 NC_005264.1 + 68803 0.66 0.905284
Target:  5'- gUGAGcACGaCCGCgUUGCCGaaCUGCgUCa -3'
miRNA:   3'- uGCUUuUGC-GGCGgAACGGC--GACG-AG- -5'
24378 3' -56.1 NC_005264.1 + 157411 0.66 0.905284
Target:  5'- gGCGAGAGCGgcgaCGCCgagacagaUGCCGCguacgcccUGCUg -3'
miRNA:   3'- -UGCUUUUGCg---GCGGa-------ACGGCG--------ACGAg -5'
24378 3' -56.1 NC_005264.1 + 23308 0.66 0.878417
Target:  5'- cGCGAu--CG-UGCCcaUGCUGCUGCUCc -3'
miRNA:   3'- -UGCUuuuGCgGCGGa-ACGGCGACGAG- -5'
24378 3' -56.1 NC_005264.1 + 150486 0.66 0.905284
Target:  5'- gACGAGAGCGUCGCCgaugGgCGUggauggUGCg- -3'
miRNA:   3'- -UGCUUUUGCGGCGGaa--CgGCG------ACGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.