Results 21 - 40 of 139 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24378 | 3' | -56.1 | NC_005264.1 | + | 51946 | 0.66 | 0.886172 |
Target: 5'- gGCGAGggUGCCGCUaacgcgucgugucgGCgCGCUcacGCUCg -3' miRNA: 3'- -UGCUUuuGCGGCGGaa------------CG-GCGA---CGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 46418 | 0.66 | 0.885478 |
Target: 5'- cGCGAGGcugcACGCCGCC---CUGC-GCUCg -3' miRNA: 3'- -UGCUUU----UGCGGCGGaacGGCGaCGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 21 | 0.66 | 0.885478 |
Target: 5'- cACGccauAACGCCGCg--GCCcuaGCUGUUCg -3' miRNA: 3'- -UGCuu--UUGCGGCGgaaCGG---CGACGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 128050 | 0.66 | 0.885478 |
Target: 5'- cGCGucGAugGCCGCCc-GCaugaGCgGCUCa -3' miRNA: 3'- -UGCu-UUugCGGCGGaaCGg---CGaCGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 104328 | 0.66 | 0.885478 |
Target: 5'- gGCGc-GACGCCGCUUacgaggaggUGCCGCUcagGCg- -3' miRNA: 3'- -UGCuuUUGCGGCGGA---------ACGGCGA---CGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 118960 | 0.66 | 0.885478 |
Target: 5'- ----cGGCGCCcCCuUUGCCGC-GCUCg -3' miRNA: 3'- ugcuuUUGCGGcGG-AACGGCGaCGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 97239 | 0.66 | 0.881268 |
Target: 5'- cGCGAAcgcagcagcaagauGugGCCGCCgggccuuggcacggUagugGCCGCUGcCUCg -3' miRNA: 3'- -UGCUU--------------UugCGGCGG--------------Aa---CGGCGAC-GAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 64430 | 0.66 | 0.878417 |
Target: 5'- cACGgcGAUGaCGUC-UGCCGCgGCUCu -3' miRNA: 3'- -UGCuuUUGCgGCGGaACGGCGaCGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 23308 | 0.66 | 0.878417 |
Target: 5'- cGCGAu--CG-UGCCcaUGCUGCUGCUCc -3' miRNA: 3'- -UGCUuuuGCgGCGGa-ACGGCGACGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 7959 | 0.66 | 0.878417 |
Target: 5'- gGCGucuuuguCGCUGCCUagagGUCGUUGCUUu -3' miRNA: 3'- -UGCuuuu---GCGGCGGAa---CGGCGACGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 72126 | 0.66 | 0.878417 |
Target: 5'- -aGGGAGCGCCGCC-UGCCGg----- -3' miRNA: 3'- ugCUUUUGCGGCGGaACGGCgacgag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 46924 | 0.66 | 0.877698 |
Target: 5'- uAUGGucuCGCCGCucgucucCUUGgCGUUGCUCa -3' miRNA: 3'- -UGCUuuuGCGGCG-------GAACgGCGACGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 10555 | 0.67 | 0.871134 |
Target: 5'- cGCGGAu-CG-CGCgUUcGCCGCUGCUUc -3' miRNA: 3'- -UGCUUuuGCgGCGgAA-CGGCGACGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 129582 | 0.67 | 0.871134 |
Target: 5'- cGCGGAu-CG-CGCgUUcGCCGCUGCUUc -3' miRNA: 3'- -UGCUUuuGCgGCGgAA-CGGCGACGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 94112 | 0.67 | 0.871134 |
Target: 5'- cCGAGguucuGGCGCCGCUggUGgaaagguacCCGCUGCUg -3' miRNA: 3'- uGCUU-----UUGCGGCGGa-AC---------GGCGACGAg -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 57193 | 0.67 | 0.871134 |
Target: 5'- gGC-AAAGCGCCGCCcgUGCCauuaUUGCUa -3' miRNA: 3'- -UGcUUUUGCGGCGGa-ACGGc---GACGAg -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 24630 | 0.67 | 0.871134 |
Target: 5'- aGCGAcuGCgguugucguuugGCCGCCUUGUCuCUGCa- -3' miRNA: 3'- -UGCUuuUG------------CGGCGGAACGGcGACGag -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 79308 | 0.67 | 0.868906 |
Target: 5'- uGCGggGucaugucgcuCGCCGCaUUUGCgugcguagcgugcgCGCUGCUCu -3' miRNA: 3'- -UGCuuUu---------GCGGCG-GAACG--------------GCGACGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 158791 | 0.67 | 0.866659 |
Target: 5'- gACGAAGAggaggaccaauuauuCGCCgagGCCUUGCCcCcGCUCu -3' miRNA: 3'- -UGCUUUU---------------GCGG---CGGAACGGcGaCGAG- -5' |
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24378 | 3' | -56.1 | NC_005264.1 | + | 95321 | 0.67 | 0.863633 |
Target: 5'- cAUGGAGAuugcCGCCGCCgggcGCCGCgaaacgGaCUCg -3' miRNA: 3'- -UGCUUUU----GCGGCGGaa--CGGCGa-----C-GAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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