miRNA display CGI


Results 41 - 60 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24378 3' -56.1 NC_005264.1 + 39201 0.68 0.814426
Target:  5'- uCGAGAACG-CGCCUacGCCGCcGCg- -3'
miRNA:   3'- uGCUUUUGCgGCGGAa-CGGCGaCGag -5'
24378 3' -56.1 NC_005264.1 + 40267 0.73 0.516722
Target:  5'- cACGAGagaugcugGACGCCGCCgcGUCGCgGUUCg -3'
miRNA:   3'- -UGCUU--------UUGCGGCGGaaCGGCGaCGAG- -5'
24378 3' -56.1 NC_005264.1 + 40795 0.68 0.796599
Target:  5'- cCGAGAGCggaGCCG-CUUGCCGCggGgUCg -3'
miRNA:   3'- uGCUUUUG---CGGCgGAACGGCGa-CgAG- -5'
24378 3' -56.1 NC_005264.1 + 41191 0.67 0.848004
Target:  5'- -aGAAGACuCCGCCccGCCuGCUcgGCUCg -3'
miRNA:   3'- ugCUUUUGcGGCGGaaCGG-CGA--CGAG- -5'
24378 3' -56.1 NC_005264.1 + 43326 0.68 0.778171
Target:  5'- cGCGAGGGCuGCCGCCUcggagcacGCC-CUGCg- -3'
miRNA:   3'- -UGCUUUUG-CGGCGGAa-------CGGcGACGag -5'
24378 3' -56.1 NC_005264.1 + 43413 0.66 0.898915
Target:  5'- aGCGAGAuCGcCCGCCa-GCCGCgagUGCa- -3'
miRNA:   3'- -UGCUUUuGC-GGCGGaaCGGCG---ACGag -5'
24378 3' -56.1 NC_005264.1 + 45891 0.67 0.854354
Target:  5'- cACGAAcuucaguguauuGCGCCGCCgcgGCaauCUGCUCc -3'
miRNA:   3'- -UGCUUu-----------UGCGGCGGaa-CGgc-GACGAG- -5'
24378 3' -56.1 NC_005264.1 + 46414 0.69 0.749559
Target:  5'- cGCGGccAGACGCCcCCagcgaccUGCCGCggGCUCa -3'
miRNA:   3'- -UGCU--UUUGCGGcGGa------ACGGCGa-CGAG- -5'
24378 3' -56.1 NC_005264.1 + 46418 0.66 0.885478
Target:  5'- cGCGAGGcugcACGCCGCC---CUGC-GCUCg -3'
miRNA:   3'- -UGCUUU----UGCGGCGGaacGGCGaCGAG- -5'
24378 3' -56.1 NC_005264.1 + 46924 0.66 0.877698
Target:  5'- uAUGGucuCGCCGCucgucucCUUGgCGUUGCUCa -3'
miRNA:   3'- -UGCUuuuGCGGCG-------GAACgGCGACGAG- -5'
24378 3' -56.1 NC_005264.1 + 46940 0.67 0.839889
Target:  5'- uACGggGACGgguucccgacuCCGUCUaGCgGCUcGCUCa -3'
miRNA:   3'- -UGCuuUUGC-----------GGCGGAaCGgCGA-CGAG- -5'
24378 3' -56.1 NC_005264.1 + 49907 0.7 0.699907
Target:  5'- -aGAGGAUGCCGCC--GCUGaaGCUCg -3'
miRNA:   3'- ugCUUUUGCGGCGGaaCGGCgaCGAG- -5'
24378 3' -56.1 NC_005264.1 + 50487 0.69 0.749559
Target:  5'- gAUGAGGACGUgGCCacgGCCGCgGC-Ca -3'
miRNA:   3'- -UGCUUUUGCGgCGGaa-CGGCGaCGaG- -5'
24378 3' -56.1 NC_005264.1 + 51059 0.66 0.904657
Target:  5'- uUGucGACGUCGCCUcuagGCCGCcuagaccUGCUUc -3'
miRNA:   3'- uGCuuUUGCGGCGGAa---CGGCG-------ACGAG- -5'
24378 3' -56.1 NC_005264.1 + 51946 0.66 0.886172
Target:  5'- gGCGAGggUGCCGCUaacgcgucgugucgGCgCGCUcacGCUCg -3'
miRNA:   3'- -UGCUUuuGCGGCGGaa------------CG-GCGA---CGAG- -5'
24378 3' -56.1 NC_005264.1 + 54912 0.66 0.898915
Target:  5'- cGCGAAGgucgcgGCGCUGCUggcgaacgGCUGCgagugGCUCc -3'
miRNA:   3'- -UGCUUU------UGCGGCGGaa------CGGCGa----CGAG- -5'
24378 3' -56.1 NC_005264.1 + 57193 0.67 0.871134
Target:  5'- gGC-AAAGCGCCGCCcgUGCCauuaUUGCUa -3'
miRNA:   3'- -UGcUUUUGCGGCGGa-ACGGc---GACGAg -5'
24378 3' -56.1 NC_005264.1 + 58019 0.67 0.839889
Target:  5'- gGCGGAcAgGCCGUCgUGCgGCgcccGCUCg -3'
miRNA:   3'- -UGCUUuUgCGGCGGaACGgCGa---CGAG- -5'
24378 3' -56.1 NC_005264.1 + 59113 0.71 0.659089
Target:  5'- gGCGGc--CGCCGCCgcugaUGCCGCgccgccGCUCc -3'
miRNA:   3'- -UGCUuuuGCGGCGGa----ACGGCGa-----CGAG- -5'
24378 3' -56.1 NC_005264.1 + 59998 0.66 0.898915
Target:  5'- aGCGAGAcgGCCGCgUgGCCGCgGCcCa -3'
miRNA:   3'- -UGCUUUugCGGCGgAaCGGCGaCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.