Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24378 | 5' | -56.8 | NC_005264.1 | + | 126395 | 1.11 | 0.002281 |
Target: 5'- gCCGAGGAGAGGCAAGUCGUCUCCGCGg -3' miRNA: 3'- -GGCUCCUCUCCGUUCAGCAGAGGCGC- -5' |
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24378 | 5' | -56.8 | NC_005264.1 | + | 146617 | 0.77 | 0.357295 |
Target: 5'- aCUGAuGGcAGAGG--GGUCGUCUCCGCGu -3' miRNA: 3'- -GGCU-CC-UCUCCguUCAGCAGAGGCGC- -5' |
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24378 | 5' | -56.8 | NC_005264.1 | + | 27829 | 0.77 | 0.365065 |
Target: 5'- gCCGAcGGAGGGGCAGacucCGUCUCCaGCGu -3' miRNA: 3'- -GGCU-CCUCUCCGUUca--GCAGAGG-CGC- -5' |
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24378 | 5' | -56.8 | NC_005264.1 | + | 48623 | 0.73 | 0.542368 |
Target: 5'- gCCGGGGAGguGGGCAAGccggCGUCgguuggguauUCCGCu -3' miRNA: 3'- -GGCUCCUC--UCCGUUCa---GCAG----------AGGCGc -5' |
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24378 | 5' | -56.8 | NC_005264.1 | + | 100999 | 0.72 | 0.601458 |
Target: 5'- gCCGAGGGGAuuGGCGauacgGGUCGUcCUCauaaGCGu -3' miRNA: 3'- -GGCUCCUCU--CCGU-----UCAGCA-GAGg---CGC- -5' |
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24378 | 5' | -56.8 | NC_005264.1 | + | 59017 | 0.72 | 0.601458 |
Target: 5'- aUCGcGGAGgcAGGCGcgucaGGUCgGUCUCCGCGc -3' miRNA: 3'- -GGCuCCUC--UCCGU-----UCAG-CAGAGGCGC- -5' |
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24378 | 5' | -56.8 | NC_005264.1 | + | 31581 | 0.71 | 0.65134 |
Target: 5'- gCCaGAGGuGGGGCGAGUCuGcUCUCUgGCGa -3' miRNA: 3'- -GG-CUCCuCUCCGUUCAG-C-AGAGG-CGC- -5' |
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24378 | 5' | -56.8 | NC_005264.1 | + | 37120 | 0.71 | 0.65134 |
Target: 5'- aCGAGGGcGAGGC-GGcCGUCUCgGCc -3' miRNA: 3'- gGCUCCU-CUCCGuUCaGCAGAGgCGc -5' |
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24378 | 5' | -56.8 | NC_005264.1 | + | 36293 | 0.71 | 0.65134 |
Target: 5'- gCGAGGAGAgGGCGGacGUCGUCgcuaUCGCu -3' miRNA: 3'- gGCUCCUCU-CCGUU--CAGCAGa---GGCGc -5' |
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24378 | 5' | -56.8 | NC_005264.1 | + | 156147 | 0.71 | 0.65134 |
Target: 5'- aCGAGGGcGAGGC-GGcCGUCUCgGCc -3' miRNA: 3'- gGCUCCU-CUCCGuUCaGCAGAGgCGc -5' |
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24378 | 5' | -56.8 | NC_005264.1 | + | 150608 | 0.71 | 0.65134 |
Target: 5'- gCCaGAGGuGGGGCGAGUCuGcUCUCUgGCGa -3' miRNA: 3'- -GG-CUCCuCUCCGUUCAG-C-AGAGG-CGC- -5' |
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24378 | 5' | -56.8 | NC_005264.1 | + | 155320 | 0.71 | 0.65134 |
Target: 5'- gCGAGGAGAgGGCGGacGUCGUCgcuaUCGCu -3' miRNA: 3'- gGCUCCUCU-CCGUU--CAGCAGa---GGCGc -5' |
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24378 | 5' | -56.8 | NC_005264.1 | + | 13274 | 0.71 | 0.691025 |
Target: 5'- aCGAGGGuucgcgccagcGAGGCGGGUCGUggagCUCCcCGg -3' miRNA: 3'- gGCUCCU-----------CUCCGUUCAGCA----GAGGcGC- -5' |
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24378 | 5' | -56.8 | NC_005264.1 | + | 132301 | 0.71 | 0.691025 |
Target: 5'- aCGAGGGuucgcgccagcGAGGCGGGUCGUggagCUCCcCGg -3' miRNA: 3'- gGCUCCU-----------CUCCGUUCAGCA----GAGGcGC- -5' |
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24378 | 5' | -56.8 | NC_005264.1 | + | 44739 | 0.7 | 0.70085 |
Target: 5'- uCUGAGGuuGGGCcuuaacguAGUUGcUCUCCGCGu -3' miRNA: 3'- -GGCUCCucUCCGu-------UCAGC-AGAGGCGC- -5' |
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24378 | 5' | -56.8 | NC_005264.1 | + | 37573 | 0.7 | 0.71062 |
Target: 5'- gCGAcGGAGGcGGCAAGUC-UCgcggcggCCGCGg -3' miRNA: 3'- gGCU-CCUCU-CCGUUCAGcAGa------GGCGC- -5' |
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24378 | 5' | -56.8 | NC_005264.1 | + | 156600 | 0.7 | 0.71062 |
Target: 5'- gCGAcGGAGGcGGCAAGUC-UCgcggcggCCGCGg -3' miRNA: 3'- gGCU-CCUCU-CCGUUCAGcAGa------GGCGC- -5' |
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24378 | 5' | -56.8 | NC_005264.1 | + | 125991 | 0.69 | 0.758347 |
Target: 5'- gCgGAGGAGGGGCAgacAGUUGcugucuacgaUCUUCGCc -3' miRNA: 3'- -GgCUCCUCUCCGU---UCAGC----------AGAGGCGc -5' |
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24378 | 5' | -56.8 | NC_005264.1 | + | 51829 | 0.69 | 0.758347 |
Target: 5'- aCCaGGaGAGGGGUggG-CG-CUCCGCGg -3' miRNA: 3'- -GGcUC-CUCUCCGuuCaGCaGAGGCGC- -5' |
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24378 | 5' | -56.8 | NC_005264.1 | + | 5868 | 0.69 | 0.775845 |
Target: 5'- aUCGAGGGGgaGGGCGAGuucucuagaccucUCGUCUgCGgGg -3' miRNA: 3'- -GGCUCCUC--UCCGUUC-------------AGCAGAgGCgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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