miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24378 5' -56.8 NC_005264.1 + 3863 0.66 0.918842
Target:  5'- gCCGGGGAuuGGGCugccccaCGUCUCCGUc -3'
miRNA:   3'- -GGCUCCUc-UCCGuuca---GCAGAGGCGc -5'
24378 5' -56.8 NC_005264.1 + 15989 0.67 0.848715
Target:  5'- cCCGGGGAGAuuuagccgcaucauGGCAGGcgacgaccgccgCGcCUCCGUGc -3'
miRNA:   3'- -GGCUCCUCU--------------CCGUUCa-----------GCaGAGGCGC- -5'
24378 5' -56.8 NC_005264.1 + 16411 0.67 0.860133
Target:  5'- aCucGGGGAGGCAAGggcCGcUCgacugCCGCGg -3'
miRNA:   3'- gGcuCCUCUCCGUUCa--GC-AGa----GGCGC- -5'
24378 5' -56.8 NC_005264.1 + 19414 0.67 0.88163
Target:  5'- --uGGGGGAGGCGAGgCGcCggguguggCCGCGg -3'
miRNA:   3'- ggcUCCUCUCCGUUCaGCaGa-------GGCGC- -5'
24378 5' -56.8 NC_005264.1 + 161202 0.67 0.88163
Target:  5'- cCCGGaaaGAGAuGGCAGGUUGgagCCGCGc -3'
miRNA:   3'- -GGCUc--CUCU-CCGUUCAGCagaGGCGC- -5'
24378 5' -56.8 NC_005264.1 + 34443 0.67 0.88838
Target:  5'- uUCGAGGAGGcgauCAAGcUCGUC-CCGCa -3'
miRNA:   3'- -GGCUCCUCUcc--GUUC-AGCAGaGGCGc -5'
24378 5' -56.8 NC_005264.1 + 123550 0.67 0.88838
Target:  5'- uCCGcGGAGGGGgAggGGUgGUCUUCgGCGu -3'
miRNA:   3'- -GGCuCCUCUCCgU--UCAgCAGAGG-CGC- -5'
24378 5' -56.8 NC_005264.1 + 120452 0.67 0.88838
Target:  5'- gCGGGGAuGAGGaAAGg-GcCUCCGCGg -3'
miRNA:   3'- gGCUCCU-CUCCgUUCagCaGAGGCGC- -5'
24378 5' -56.8 NC_005264.1 + 121648 0.66 0.894915
Target:  5'- gCCGAgcaGGcGGGGCgGAGUCuucuGUCUCCGUc -3'
miRNA:   3'- -GGCU---CCuCUCCG-UUCAG----CAGAGGCGc -5'
24378 5' -56.8 NC_005264.1 + 37336 0.68 0.836875
Target:  5'- aCGAGGAuaGAGGCuuuGUUGg--CCGCGc -3'
miRNA:   3'- gGCUCCU--CUCCGuu-CAGCagaGGCGC- -5'
24378 5' -56.8 NC_005264.1 + 4670 0.68 0.836875
Target:  5'- aCGAGGAGGGGUuugccugcgaAAGcUG-CUCUGCGa -3'
miRNA:   3'- gGCUCCUCUCCG----------UUCaGCaGAGGCGC- -5'
24378 5' -56.8 NC_005264.1 + 26390 0.69 0.785777
Target:  5'- gCGAGGAGAaGCAAGcCGUagCCGCc -3'
miRNA:   3'- gGCUCCUCUcCGUUCaGCAgaGGCGc -5'
24378 5' -56.8 NC_005264.1 + 100999 0.72 0.601458
Target:  5'- gCCGAGGGGAuuGGCGauacgGGUCGUcCUCauaaGCGu -3'
miRNA:   3'- -GGCUCCUCU--CCGU-----UCAGCA-GAGg---CGC- -5'
24378 5' -56.8 NC_005264.1 + 150608 0.71 0.65134
Target:  5'- gCCaGAGGuGGGGCGAGUCuGcUCUCUgGCGa -3'
miRNA:   3'- -GG-CUCCuCUCCGUUCAG-C-AGAGG-CGC- -5'
24378 5' -56.8 NC_005264.1 + 155320 0.71 0.65134
Target:  5'- gCGAGGAGAgGGCGGacGUCGUCgcuaUCGCu -3'
miRNA:   3'- gGCUCCUCU-CCGUU--CAGCAGa---GGCGc -5'
24378 5' -56.8 NC_005264.1 + 156147 0.71 0.65134
Target:  5'- aCGAGGGcGAGGC-GGcCGUCUCgGCc -3'
miRNA:   3'- gGCUCCU-CUCCGuUCaGCAGAGgCGc -5'
24378 5' -56.8 NC_005264.1 + 132301 0.71 0.691025
Target:  5'- aCGAGGGuucgcgccagcGAGGCGGGUCGUggagCUCCcCGg -3'
miRNA:   3'- gGCUCCU-----------CUCCGUUCAGCA----GAGGcGC- -5'
24378 5' -56.8 NC_005264.1 + 44739 0.7 0.70085
Target:  5'- uCUGAGGuuGGGCcuuaacguAGUUGcUCUCCGCGu -3'
miRNA:   3'- -GGCUCCucUCCGu-------UCAGC-AGAGGCGC- -5'
24378 5' -56.8 NC_005264.1 + 156600 0.7 0.71062
Target:  5'- gCGAcGGAGGcGGCAAGUC-UCgcggcggCCGCGg -3'
miRNA:   3'- gGCU-CCUCU-CCGUUCAGcAGa------GGCGC- -5'
24378 5' -56.8 NC_005264.1 + 124894 0.69 0.775845
Target:  5'- aUCGAGGGGgaGGGCGAGuucucuagaccucUCGUCUgCGgGg -3'
miRNA:   3'- -GGCUCCUC--UCCGUUC-------------AGCAGAgGCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.