miRNA display CGI


Results 1 - 20 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24379 3' -59.1 NC_005264.1 + 125449 1.09 0.001417
Target:  5'- gAUUGUUGCGGUCCCUCUGCCGCGCCCu -3'
miRNA:   3'- -UAACAACGCCAGGGAGACGGCGCGGG- -5'
24379 3' -59.1 NC_005264.1 + 107656 0.74 0.326483
Target:  5'- --cGUUucGCGGUcgccgCCUUCaGCCGCGCCCa -3'
miRNA:   3'- uaaCAA--CGCCA-----GGGAGaCGGCGCGGG- -5'
24379 3' -59.1 NC_005264.1 + 100382 0.73 0.396778
Target:  5'- -aUGcUGCGGaUgCCgCUGCUGCGCCCc -3'
miRNA:   3'- uaACaACGCC-AgGGaGACGGCGCGGG- -5'
24379 3' -59.1 NC_005264.1 + 154831 0.72 0.44874
Target:  5'- --cGUgGCGGgCgCCUCUGCCG-GCCCc -3'
miRNA:   3'- uaaCAaCGCCaG-GGAGACGGCgCGGG- -5'
24379 3' -59.1 NC_005264.1 + 35805 0.72 0.44874
Target:  5'- --cGUgGCGGgCgCCUCUGCCG-GCCCc -3'
miRNA:   3'- uaaCAaCGCCaG-GGAGACGGCgCGGG- -5'
24379 3' -59.1 NC_005264.1 + 118961 0.71 0.466881
Target:  5'- -----gGCGccCCCUUUGCCGCGCUCg -3'
miRNA:   3'- uaacaaCGCcaGGGAGACGGCGCGGG- -5'
24379 3' -59.1 NC_005264.1 + 162581 0.7 0.56252
Target:  5'- -----aGUGGg-CUUCUGCCGCGUCCa -3'
miRNA:   3'- uaacaaCGCCagGGAGACGGCGCGGG- -5'
24379 3' -59.1 NC_005264.1 + 142869 0.7 0.56252
Target:  5'- uUUGUUGC-GUCgaCUCgcGCCGCGCCUu -3'
miRNA:   3'- uAACAACGcCAGg-GAGa-CGGCGCGGG- -5'
24379 3' -59.1 NC_005264.1 + 147049 0.69 0.622451
Target:  5'- -aUGUUaGCGGgcuuucuguUCUCUCUGCU-CGCCCg -3'
miRNA:   3'- uaACAA-CGCC---------AGGGAGACGGcGCGGG- -5'
24379 3' -59.1 NC_005264.1 + 126008 0.69 0.632504
Target:  5'- --aGUUGCuGUCUacgaUCUucGCCGCGCCUc -3'
miRNA:   3'- uaaCAACGcCAGGg---AGA--CGGCGCGGG- -5'
24379 3' -59.1 NC_005264.1 + 117428 0.69 0.635521
Target:  5'- -cUGUcGCGGcgcgcagggcgccgCCCUCcaucguuUGCCGCGCCUu -3'
miRNA:   3'- uaACAaCGCCa-------------GGGAG-------ACGGCGCGGG- -5'
24379 3' -59.1 NC_005264.1 + 56964 0.68 0.641553
Target:  5'- -cUGUgGCGGcgacgagUCCCUCgucGcCCGCGCUCg -3'
miRNA:   3'- uaACAaCGCC-------AGGGAGa--C-GGCGCGGG- -5'
24379 3' -59.1 NC_005264.1 + 133695 0.68 0.652604
Target:  5'- -----cGCGGUCCUUgCcGCCGCGCaCUg -3'
miRNA:   3'- uaacaaCGCCAGGGA-GaCGGCGCG-GG- -5'
24379 3' -59.1 NC_005264.1 + 122518 0.68 0.662634
Target:  5'- ------cUGGUCCCgacaCUGCUGCGCUCg -3'
miRNA:   3'- uaacaacGCCAGGGa---GACGGCGCGGG- -5'
24379 3' -59.1 NC_005264.1 + 15243 0.68 0.682614
Target:  5'- -----aGUGGUCgUUCUGCaUGCGCCUg -3'
miRNA:   3'- uaacaaCGCCAGgGAGACG-GCGCGGG- -5'
24379 3' -59.1 NC_005264.1 + 74006 0.68 0.682614
Target:  5'- cGUUGUacaUGCGGUCgccgagagagaaUCUCUGC-GaCGCCCa -3'
miRNA:   3'- -UAACA---ACGCCAG------------GGAGACGgC-GCGGG- -5'
24379 3' -59.1 NC_005264.1 + 2185 0.68 0.692548
Target:  5'- --cGUUGC---CCCUCcauUGCCgGCGCCCa -3'
miRNA:   3'- uaaCAACGccaGGGAG---ACGG-CGCGGG- -5'
24379 3' -59.1 NC_005264.1 + 51095 0.68 0.692548
Target:  5'- -----cGCGGUCgCCggugcugcggUCUGCuCGCGCCUc -3'
miRNA:   3'- uaacaaCGCCAG-GG----------AGACG-GCGCGGG- -5'
24379 3' -59.1 NC_005264.1 + 65164 0.67 0.702434
Target:  5'- --cGcgGCGGcgCCCUCUcuggccaugGCCGCGgCCu -3'
miRNA:   3'- uaaCaaCGCCa-GGGAGA---------CGGCGCgGG- -5'
24379 3' -59.1 NC_005264.1 + 137160 0.67 0.702434
Target:  5'- ----aUGCGcGUCCCgucccuUCUGCUGCcCCCa -3'
miRNA:   3'- uaacaACGC-CAGGG------AGACGGCGcGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.