Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24379 | 3' | -59.1 | NC_005264.1 | + | 100382 | 0.73 | 0.396778 |
Target: 5'- -aUGcUGCGGaUgCCgCUGCUGCGCCCc -3' miRNA: 3'- uaACaACGCC-AgGGaGACGGCGCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 19845 | 0.66 | 0.796709 |
Target: 5'- --aGUUGCgGGUCCCcacGCC-CGCCUc -3' miRNA: 3'- uaaCAACG-CCAGGGagaCGGcGCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 4246 | 0.66 | 0.796709 |
Target: 5'- ----cUGCGGagCCUCUugccGCCGCGCa- -3' miRNA: 3'- uaacaACGCCagGGAGA----CGGCGCGgg -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 153321 | 0.66 | 0.796709 |
Target: 5'- --aGUUcGagGGcCCCUCgagggcGCCGCGCCUg -3' miRNA: 3'- uaaCAA-Cg-CCaGGGAGa-----CGGCGCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 35606 | 0.66 | 0.787787 |
Target: 5'- --cGUUGCGcGUC--UCUGCCGCGgCa -3' miRNA: 3'- uaaCAACGC-CAGggAGACGGCGCgGg -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 120706 | 0.66 | 0.786887 |
Target: 5'- uUUGUucucucgUGCGGUCUCagcgcacaccCUGCCagGUGCCCg -3' miRNA: 3'- uAACA-------ACGCCAGGGa---------GACGG--CGCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 12699 | 0.66 | 0.778729 |
Target: 5'- gAUUGUUuuggcgugcGCGGgCCCUCUGacaUGCuccGCCCa -3' miRNA: 3'- -UAACAA---------CGCCaGGGAGACg--GCG---CGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 23925 | 0.67 | 0.712262 |
Target: 5'- -cUGUgucgGCGGUUCUg--GUCGCGCCg -3' miRNA: 3'- uaACAa---CGCCAGGGagaCGGCGCGGg -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 137160 | 0.67 | 0.702434 |
Target: 5'- ----aUGCGcGUCCCgucccuUCUGCUGCcCCCa -3' miRNA: 3'- uaacaACGC-CAGGG------AGACGGCGcGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 65164 | 0.67 | 0.702434 |
Target: 5'- --cGcgGCGGcgCCCUCUcuggccaugGCCGCGgCCu -3' miRNA: 3'- uaaCaaCGCCa-GGGAGA---------CGGCGCgGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 154831 | 0.72 | 0.44874 |
Target: 5'- --cGUgGCGGgCgCCUCUGCCG-GCCCc -3' miRNA: 3'- uaaCAaCGCCaG-GGAGACGGCgCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 118961 | 0.71 | 0.466881 |
Target: 5'- -----gGCGccCCCUUUGCCGCGCUCg -3' miRNA: 3'- uaacaaCGCcaGGGAGACGGCGCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 117428 | 0.69 | 0.635521 |
Target: 5'- -cUGUcGCGGcgcgcagggcgccgCCCUCcaucguuUGCCGCGCCUu -3' miRNA: 3'- uaACAaCGCCa-------------GGGAG-------ACGGCGCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 56964 | 0.68 | 0.641553 |
Target: 5'- -cUGUgGCGGcgacgagUCCCUCgucGcCCGCGCUCg -3' miRNA: 3'- uaACAaCGCC-------AGGGAGa--C-GGCGCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 133695 | 0.68 | 0.652604 |
Target: 5'- -----cGCGGUCCUUgCcGCCGCGCaCUg -3' miRNA: 3'- uaacaaCGCCAGGGA-GaCGGCGCG-GG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 2185 | 0.68 | 0.692548 |
Target: 5'- --cGUUGC---CCCUCcauUGCCgGCGCCCa -3' miRNA: 3'- uaaCAACGccaGGGAG---ACGG-CGCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 51095 | 0.68 | 0.692548 |
Target: 5'- -----cGCGGUCgCCggugcugcggUCUGCuCGCGCCUc -3' miRNA: 3'- uaacaaCGCCAG-GG----------AGACG-GCGCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 125449 | 1.09 | 0.001417 |
Target: 5'- gAUUGUUGCGGUCCCUCUGCCGCGCCCu -3' miRNA: 3'- -UAACAACGCCAGGGAGACGGCGCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 34294 | 0.66 | 0.796709 |
Target: 5'- --aGUUcGagGGcCCCUCgagggcGCCGCGCCUg -3' miRNA: 3'- uaaCAA-Cg-CCaGGGAGa-----CGGCGCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 1679 | 0.66 | 0.786887 |
Target: 5'- uUUGUucucucgUGCGGUCUCagcgcacaccCUGCCagGUGCCCg -3' miRNA: 3'- uAACA-------ACGCCAGGGa---------GACGG--CGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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