Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24379 | 3' | -59.1 | NC_005264.1 | + | 64166 | 0.66 | 0.760242 |
Target: 5'- -----aGCGGcUCCCUCUaaGCUaGCGCCg -3' miRNA: 3'- uaacaaCGCC-AGGGAGA--CGG-CGCGGg -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 1679 | 0.66 | 0.786887 |
Target: 5'- uUUGUucucucgUGCGGUCUCagcgcacaccCUGCCagGUGCCCg -3' miRNA: 3'- uAACA-------ACGCCAGGGa---------GACGG--CGCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 34294 | 0.66 | 0.796709 |
Target: 5'- --aGUUcGagGGcCCCUCgagggcGCCGCGCCUg -3' miRNA: 3'- uaaCAA-Cg-CCaGGGAGa-----CGGCGCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 45797 | 0.66 | 0.796709 |
Target: 5'- ---aUUGCGGUCUgggCcGCCGCGCUg -3' miRNA: 3'- uaacAACGCCAGGga-GaCGGCGCGGg -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 122518 | 0.68 | 0.662634 |
Target: 5'- ------cUGGUCCCgacaCUGCUGCGCUCg -3' miRNA: 3'- uaacaacGCCAGGGa---GACGGCGCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 15243 | 0.68 | 0.682614 |
Target: 5'- -----aGUGGUCgUUCUGCaUGCGCCUg -3' miRNA: 3'- uaacaaCGCCAGgGAGACG-GCGCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 125449 | 1.09 | 0.001417 |
Target: 5'- gAUUGUUGCGGUCCCUCUGCCGCGCCCu -3' miRNA: 3'- -UAACAACGCCAGGGAGACGGCGCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 142869 | 0.7 | 0.56252 |
Target: 5'- uUUGUUGC-GUCgaCUCgcGCCGCGCCUu -3' miRNA: 3'- uAACAACGcCAGg-GAGa-CGGCGCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 162581 | 0.7 | 0.56252 |
Target: 5'- -----aGUGGg-CUUCUGCCGCGUCCa -3' miRNA: 3'- uaacaaCGCCagGGAGACGGCGCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 126008 | 0.69 | 0.632504 |
Target: 5'- --aGUUGCuGUCUacgaUCUucGCCGCGCCUc -3' miRNA: 3'- uaaCAACGcCAGGg---AGA--CGGCGCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 142574 | 0.67 | 0.731713 |
Target: 5'- -----aGaCGGUcCCCUCcgcgagGCCGCGCCg -3' miRNA: 3'- uaacaaC-GCCA-GGGAGa-----CGGCGCGGg -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 35805 | 0.72 | 0.44874 |
Target: 5'- --cGUgGCGGgCgCCUCUGCCG-GCCCc -3' miRNA: 3'- uaaCAaCGCCaG-GGAGACGGCgCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 58456 | 0.67 | 0.731713 |
Target: 5'- --gGUUGuCGGgcgCCagccuaUCUGCCGCGCg- -3' miRNA: 3'- uaaCAAC-GCCa--GGg-----AGACGGCGCGgg -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 147049 | 0.69 | 0.622451 |
Target: 5'- -aUGUUaGCGGgcuuucuguUCUCUCUGCU-CGCCCg -3' miRNA: 3'- uaACAA-CGCC---------AGGGAGACGGcGCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 107656 | 0.74 | 0.326483 |
Target: 5'- --cGUUucGCGGUcgccgCCUUCaGCCGCGCCCa -3' miRNA: 3'- uaaCAA--CGCCA-----GGGAGaCGGCGCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 74006 | 0.68 | 0.682614 |
Target: 5'- cGUUGUacaUGCGGUCgccgagagagaaUCUCUGC-GaCGCCCa -3' miRNA: 3'- -UAACA---ACGCCAG------------GGAGACGgC-GCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 128428 | 0.66 | 0.769545 |
Target: 5'- -----cGCGGgucucggcucauUCCCUgagCUcgaGCCGCGCCCg -3' miRNA: 3'- uaacaaCGCC------------AGGGA---GA---CGGCGCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 153321 | 0.66 | 0.796709 |
Target: 5'- --aGUUcGagGGcCCCUCgagggcGCCGCGCCUg -3' miRNA: 3'- uaaCAA-Cg-CCaGGGAGa-----CGGCGCGGG- -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 35606 | 0.66 | 0.787787 |
Target: 5'- --cGUUGCGcGUC--UCUGCCGCGgCa -3' miRNA: 3'- uaaCAACGC-CAGggAGACGGCGCgGg -5' |
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24379 | 3' | -59.1 | NC_005264.1 | + | 120706 | 0.66 | 0.786887 |
Target: 5'- uUUGUucucucgUGCGGUCUCagcgcacaccCUGCCagGUGCCCg -3' miRNA: 3'- uAACA-------ACGCCAGGGa---------GACGG--CGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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