miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24379 5' -54.7 NC_005264.1 + 125496 1.06 0.005537
Target:  5'- uUCGAGCGCGGCCAACAAAGCCUCUAUc -3'
miRNA:   3'- -AGCUCGCGCCGGUUGUUUCGGAGAUA- -5'
24379 5' -54.7 NC_005264.1 + 816 0.82 0.209708
Target:  5'- -gGuGCGCGGCCGGCuuuAGCCUCUGUc -3'
miRNA:   3'- agCuCGCGCCGGUUGuu-UCGGAGAUA- -5'
24379 5' -54.7 NC_005264.1 + 88605 0.78 0.324497
Target:  5'- -gGAGCGCGGCCAGCGcgcuacgugcGAGUUUCUGa -3'
miRNA:   3'- agCUCGCGCCGGUUGU----------UUCGGAGAUa -5'
24379 5' -54.7 NC_005264.1 + 54589 0.76 0.414955
Target:  5'- gUGAGCGUGGUCAACGccGGCCUCg-- -3'
miRNA:   3'- aGCUCGCGCCGGUUGUu-UCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 82857 0.76 0.414955
Target:  5'- ---cGCGCGGCCGGCAucGGUCUCUGUu -3'
miRNA:   3'- agcuCGCGCCGGUUGUu-UCGGAGAUA- -5'
24379 5' -54.7 NC_005264.1 + 55836 0.75 0.470382
Target:  5'- gCG-GCGCGGCUGACuGGGCCUCa-- -3'
miRNA:   3'- aGCuCGCGCCGGUUGuUUCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 109910 0.74 0.509349
Target:  5'- gCGGGCGCGGCCAuGCAAuGCCcCUc- -3'
miRNA:   3'- aGCUCGCGCCGGU-UGUUuCGGaGAua -5'
24379 5' -54.7 NC_005264.1 + 105863 0.74 0.53944
Target:  5'- gCGAGCGCGGgCGACGAGGgaCUCg-- -3'
miRNA:   3'- aGCUCGCGCCgGUUGUUUCg-GAGaua -5'
24379 5' -54.7 NC_005264.1 + 116417 0.73 0.580434
Target:  5'- gUCGAGCGCaGGgCGGCGugcAGCCUCg-- -3'
miRNA:   3'- -AGCUCGCG-CCgGUUGUu--UCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 157938 0.73 0.590795
Target:  5'- -aGGGacgGCGGCCAGCGuGGCCUCg-- -3'
miRNA:   3'- agCUCg--CGCCGGUUGUuUCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 102128 0.72 0.642921
Target:  5'- aCGAGgcCGCGGCCAACAAccugcuGaCCUCUGc -3'
miRNA:   3'- aGCUC--GCGCCGGUUGUUu-----C-GGAGAUa -5'
24379 5' -54.7 NC_005264.1 + 56413 0.71 0.694813
Target:  5'- aUCGAGCGCGGCgCcgUcGAGCUUCg-- -3'
miRNA:   3'- -AGCUCGCGCCG-GuuGuUUCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 152620 0.71 0.694813
Target:  5'- aUUGAGCccgaGGCCAGCGAGGCCgaaaaCUAUc -3'
miRNA:   3'- -AGCUCGcg--CCGGUUGUUUCGGa----GAUA- -5'
24379 5' -54.7 NC_005264.1 + 135572 0.71 0.715254
Target:  5'- ---cGUG-GGCCAACAGGGCCUCUu- -3'
miRNA:   3'- agcuCGCgCCGGUUGUUUCGGAGAua -5'
24379 5' -54.7 NC_005264.1 + 138672 0.7 0.735399
Target:  5'- cCGAcCGCGGCCG-CAGcAGCCUCg-- -3'
miRNA:   3'- aGCUcGCGCCGGUuGUU-UCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 91555 0.7 0.735399
Target:  5'- aUCGGGCGCGGCgGggggcACGAGGCUUg--- -3'
miRNA:   3'- -AGCUCGCGCCGgU-----UGUUUCGGAgaua -5'
24379 5' -54.7 NC_005264.1 + 129605 0.7 0.745337
Target:  5'- gCG-GCGCGG-CGGCGAAGCUUCUc- -3'
miRNA:   3'- aGCuCGCGCCgGUUGUUUCGGAGAua -5'
24379 5' -54.7 NC_005264.1 + 146538 0.7 0.745337
Target:  5'- -aGAGUGCGGCgcACAuccccAGCCUCUAc -3'
miRNA:   3'- agCUCGCGCCGguUGUu----UCGGAGAUa -5'
24379 5' -54.7 NC_005264.1 + 23323 0.7 0.755171
Target:  5'- gCGGGCcacaacaucGCGGCCAGCGGGGUCUg--- -3'
miRNA:   3'- aGCUCG---------CGCCGGUUGUUUCGGAgaua -5'
24379 5' -54.7 NC_005264.1 + 108609 0.7 0.764892
Target:  5'- gCGcGCGgGGCCGccucgACAcAGGCCUCUAUu -3'
miRNA:   3'- aGCuCGCgCCGGU-----UGU-UUCGGAGAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.