miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24379 5' -54.7 NC_005264.1 + 128894 0.68 0.861691
Target:  5'- aUCGGGCGCGGucCCGGCGcgccacGGCCUUc-- -3'
miRNA:   3'- -AGCUCGCGCC--GGUUGUu-----UCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 149450 0.69 0.811466
Target:  5'- -aGAGCuGCGGCgGAgGAGGUCUCg-- -3'
miRNA:   3'- agCUCG-CGCCGgUUgUUUCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 84473 0.69 0.811466
Target:  5'- aUCGGGUGCGGCUgcuACGcucuGGGCCUuaCUAUg -3'
miRNA:   3'- -AGCUCGCGCCGGu--UGU----UUCGGA--GAUA- -5'
24379 5' -54.7 NC_005264.1 + 5144 0.69 0.819432
Target:  5'- cUCGAuGCGCGGCCGcgccGCAucguccgAAGCCUa--- -3'
miRNA:   3'- -AGCU-CGCGCCGGU----UGU-------UUCGGAgaua -5'
24379 5' -54.7 NC_005264.1 + 128111 0.68 0.837452
Target:  5'- aCGAGCGauGCCAGCuGGGGCCgaaUAUg -3'
miRNA:   3'- aGCUCGCgcCGGUUG-UUUCGGag-AUA- -5'
24379 5' -54.7 NC_005264.1 + 158887 0.68 0.837452
Target:  5'- cCG-GCGCGGCCAggACGuu-CCUCUAc -3'
miRNA:   3'- aGCuCGCGCCGGU--UGUuucGGAGAUa -5'
24379 5' -54.7 NC_005264.1 + 153158 0.68 0.845736
Target:  5'- gUCGAGgCGCGaGCCcgccuccccCAAGGCCUCg-- -3'
miRNA:   3'- -AGCUC-GCGC-CGGuu-------GUUUCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 58269 0.68 0.853818
Target:  5'- uUCGAGCccGCuGCCuugGACAGAGCUUCUu- -3'
miRNA:   3'- -AGCUCG--CGcCGG---UUGUUUCGGAGAua -5'
24379 5' -54.7 NC_005264.1 + 35279 0.68 0.861691
Target:  5'- gCGGGCGCGGCCGu---GGUC-CUGa -3'
miRNA:   3'- aGCUCGCGCCGGUuguuUCGGaGAUa -5'
24379 5' -54.7 NC_005264.1 + 2993 0.69 0.802453
Target:  5'- aUCGAGCGCcgacugGGCCGGCGGcucGgCUCUGg -3'
miRNA:   3'- -AGCUCGCG------CCGGUUGUUu--CgGAGAUa -5'
24379 5' -54.7 NC_005264.1 + 156153 0.69 0.802453
Target:  5'- gCGAG-GCGGCCGuCucGGCCUCg-- -3'
miRNA:   3'- aGCUCgCGCCGGUuGuuUCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 76708 0.69 0.793281
Target:  5'- -gGAGCGCGGCgCAACuc-GCUUCg-- -3'
miRNA:   3'- agCUCGCGCCG-GUUGuuuCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 88605 0.78 0.324497
Target:  5'- -gGAGCGCGGCCAGCGcgcuacgugcGAGUUUCUGa -3'
miRNA:   3'- agCUCGCGCCGGUUGU----------UUCGGAGAUa -5'
24379 5' -54.7 NC_005264.1 + 54589 0.76 0.414955
Target:  5'- gUGAGCGUGGUCAACGccGGCCUCg-- -3'
miRNA:   3'- aGCUCGCGCCGGUUGUu-UCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 82857 0.76 0.414955
Target:  5'- ---cGCGCGGCCGGCAucGGUCUCUGUu -3'
miRNA:   3'- agcuCGCGCCGGUUGUu-UCGGAGAUA- -5'
24379 5' -54.7 NC_005264.1 + 55836 0.75 0.470382
Target:  5'- gCG-GCGCGGCUGACuGGGCCUCa-- -3'
miRNA:   3'- aGCuCGCGCCGGUUGuUUCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 56413 0.71 0.694813
Target:  5'- aUCGAGCGCGGCgCcgUcGAGCUUCg-- -3'
miRNA:   3'- -AGCUCGCGCCG-GuuGuUUCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 146538 0.7 0.745337
Target:  5'- -aGAGUGCGGCgcACAuccccAGCCUCUAc -3'
miRNA:   3'- agCUCGCGCCGguUGUu----UCGGAGAUa -5'
24379 5' -54.7 NC_005264.1 + 108609 0.7 0.764892
Target:  5'- gCGcGCGgGGCCGccucgACAcAGGCCUCUAUu -3'
miRNA:   3'- aGCuCGCgCCGGU-----UGU-UUCGGAGAUA- -5'
24379 5' -54.7 NC_005264.1 + 76850 0.7 0.783957
Target:  5'- cCGAGCGCGGCUuaguauACGuGGaCCUCg-- -3'
miRNA:   3'- aGCUCGCGCCGGu-----UGUuUC-GGAGaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.