Results 1 - 20 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24379 | 5' | -54.7 | NC_005264.1 | + | 145936 | 0.66 | 0.938029 |
Target: 5'- aUCGucCGCGGCCGACGGGaauuUCUCUGc -3' miRNA: 3'- -AGCucGCGCCGGUUGUUUc---GGAGAUa -5' |
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24379 | 5' | -54.7 | NC_005264.1 | + | 80643 | 0.67 | 0.910464 |
Target: 5'- -gGAcGCGCGGCCAcgACAcGGCCgcUCUu- -3' miRNA: 3'- agCU-CGCGCCGGU--UGUuUCGG--AGAua -5' |
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24379 | 5' | -54.7 | NC_005264.1 | + | 129637 | 0.67 | 0.903569 |
Target: 5'- cCGAGCGCcGCCAGCcuuAAGCguaauagCUCUGc -3' miRNA: 3'- aGCUCGCGcCGGUUGu--UUCG-------GAGAUa -5' |
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24379 | 5' | -54.7 | NC_005264.1 | + | 125496 | 1.06 | 0.005537 |
Target: 5'- uUCGAGCGCGGCCAACAAAGCCUCUAUc -3' miRNA: 3'- -AGCUCGCGCCGGUUGUUUCGGAGAUA- -5' |
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24379 | 5' | -54.7 | NC_005264.1 | + | 38957 | 0.66 | 0.933013 |
Target: 5'- cUCGcAGCGUGGCCG----AGCCuacUCUGUg -3' miRNA: 3'- -AGC-UCGCGCCGGUuguuUCGG---AGAUA- -5' |
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24379 | 5' | -54.7 | NC_005264.1 | + | 151356 | 0.66 | 0.927749 |
Target: 5'- ---cGCGCGGCCuucguuaugGGCAGGuCCUCUAUg -3' miRNA: 3'- agcuCGCGCCGG---------UUGUUUcGGAGAUA- -5' |
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24379 | 5' | -54.7 | NC_005264.1 | + | 5270 | 0.66 | 0.927749 |
Target: 5'- gCGAGuCGCGGCCGgacgGCGGGGCggcggCUGa -3' miRNA: 3'- aGCUC-GCGCCGGU----UGUUUCGga---GAUa -5' |
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24379 | 5' | -54.7 | NC_005264.1 | + | 90462 | 0.66 | 0.924471 |
Target: 5'- gCG-GCGCGGCCGucaaACAAAguccaagucccguucGCCUCg-- -3' miRNA: 3'- aGCuCGCGCCGGU----UGUUU---------------CGGAGaua -5' |
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24379 | 5' | -54.7 | NC_005264.1 | + | 79963 | 0.66 | 0.918808 |
Target: 5'- aUGAGCGCgacGGCCAGCAAacagagaccgaugccGGCCg---- -3' miRNA: 3'- aGCUCGCG---CCGGUUGUU---------------UCGGagaua -5' |
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24379 | 5' | -54.7 | NC_005264.1 | + | 7121 | 0.67 | 0.910464 |
Target: 5'- cCGuuAGCGcCGGCCGACuGAGCCg---- -3' miRNA: 3'- aGC--UCGC-GCCGGUUGuUUCGGagaua -5' |
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24379 | 5' | -54.7 | NC_005264.1 | + | 4090 | 0.66 | 0.916473 |
Target: 5'- aCGGGCggcgucGCGGCaCGACGGGGCCg---- -3' miRNA: 3'- aGCUCG------CGCCG-GUUGUUUCGGagaua -5' |
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24379 | 5' | -54.7 | NC_005264.1 | + | 25380 | 0.66 | 0.922235 |
Target: 5'- -gGAGgGCGGCUAGCAcGGUUUCc-- -3' miRNA: 3'- agCUCgCGCCGGUUGUuUCGGAGaua -5' |
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24379 | 5' | -54.7 | NC_005264.1 | + | 34878 | 0.66 | 0.938029 |
Target: 5'- gCGAGCcauuGCGGUCAaccaaggagcggGCGAuuguuccccccAGCCUCUGUu -3' miRNA: 3'- aGCUCG----CGCCGGU------------UGUU-----------UCGGAGAUA- -5' |
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24379 | 5' | -54.7 | NC_005264.1 | + | 125838 | 0.67 | 0.910464 |
Target: 5'- gUUGuuGCuGUGGCCAGCAGGGCUgCUGa -3' miRNA: 3'- -AGCu-CG-CGCCGGUUGUUUCGGaGAUa -5' |
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24379 | 5' | -54.7 | NC_005264.1 | + | 83260 | 0.66 | 0.935049 |
Target: 5'- gCGcuGGCGCGGCgAacuucaauuucggccGCAAGGCCUUg-- -3' miRNA: 3'- aGC--UCGCGCCGgU---------------UGUUUCGGAGaua -5' |
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24379 | 5' | -54.7 | NC_005264.1 | + | 141457 | 0.66 | 0.922235 |
Target: 5'- aUCGAG-GCGaG-CGGCGGGGCCUCUu- -3' miRNA: 3'- -AGCUCgCGC-CgGUUGUUUCGGAGAua -5' |
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24379 | 5' | -54.7 | NC_005264.1 | + | 35787 | 0.67 | 0.910464 |
Target: 5'- -aGGGCGCGGUgGcgccgucgugGCGGGcGCCUCUGc -3' miRNA: 3'- agCUCGCGCCGgU----------UGUUU-CGGAGAUa -5' |
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24379 | 5' | -54.7 | NC_005264.1 | + | 40393 | 0.67 | 0.910464 |
Target: 5'- gCGGGCGCGGCCcuACGuc-CCUCc-- -3' miRNA: 3'- aGCUCGCGCCGGu-UGUuucGGAGaua -5' |
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24379 | 5' | -54.7 | NC_005264.1 | + | 102836 | 0.66 | 0.933013 |
Target: 5'- cUUGGGcCGCGGCC-ACGcGGCCgUCUc- -3' miRNA: 3'- -AGCUC-GCGCCGGuUGUuUCGG-AGAua -5' |
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24379 | 5' | -54.7 | NC_005264.1 | + | 86505 | 0.66 | 0.927749 |
Target: 5'- gUCGccGCGCGGCCAACuuucguGCgUCg-- -3' miRNA: 3'- -AGCu-CGCGCCGGUUGuuu---CGgAGaua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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