miRNA display CGI


Results 21 - 40 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24379 5' -54.7 NC_005264.1 + 37126 0.69 0.802453
Target:  5'- gCGAG-GCGGCCGuCucGGCCUCg-- -3'
miRNA:   3'- aGCUCgCGCCGGUuGuuUCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 38610 0.67 0.897709
Target:  5'- cCGAGCGCGGCgAAgGGguuAGCCa---- -3'
miRNA:   3'- aGCUCGCGCCGgUUgUU---UCGGagaua -5'
24379 5' -54.7 NC_005264.1 + 38957 0.66 0.933013
Target:  5'- cUCGcAGCGUGGCCG----AGCCuacUCUGUg -3'
miRNA:   3'- -AGC-UCGCGCCGGUuguuUCGG---AGAUA- -5'
24379 5' -54.7 NC_005264.1 + 39809 0.66 0.936052
Target:  5'- gCGAuGCGCGGCacgcauccgccuaGAUGGAGCCUgCUGa -3'
miRNA:   3'- aGCU-CGCGCCGg------------UUGUUUCGGA-GAUa -5'
24379 5' -54.7 NC_005264.1 + 39861 0.68 0.837452
Target:  5'- cCG-GCGCGGCCAggACGuu-CCUCUAc -3'
miRNA:   3'- aGCuCGCGCCGGU--UGUuucGGAGAUa -5'
24379 5' -54.7 NC_005264.1 + 40393 0.67 0.910464
Target:  5'- gCGGGCGCGGCCcuACGuc-CCUCc-- -3'
miRNA:   3'- aGCUCGCGCCGGu-UGUuucGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 42953 0.67 0.89097
Target:  5'- cCGGGCGCGGC-AAC---GCCUCg-- -3'
miRNA:   3'- aGCUCGCGCCGgUUGuuuCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 43908 0.66 0.916473
Target:  5'- aCGAuaGCGCGGCCGuc---GCCUCg-- -3'
miRNA:   3'- aGCU--CGCGCCGGUuguuuCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 54589 0.76 0.414955
Target:  5'- gUGAGCGUGGUCAACGccGGCCUCg-- -3'
miRNA:   3'- aGCUCGCGCCGGUUGUu-UCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 55836 0.75 0.470382
Target:  5'- gCG-GCGCGGCUGACuGGGCCUCa-- -3'
miRNA:   3'- aGCuCGCGCCGGUUGuUUCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 56413 0.71 0.694813
Target:  5'- aUCGAGCGCGGCgCcgUcGAGCUUCg-- -3'
miRNA:   3'- -AGCUCGCGCCG-GuuGuUUCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 58269 0.68 0.853818
Target:  5'- uUCGAGCccGCuGCCuugGACAGAGCUUCUu- -3'
miRNA:   3'- -AGCUCG--CGcCGG---UUGUUUCGGAGAua -5'
24379 5' -54.7 NC_005264.1 + 63631 0.67 0.904208
Target:  5'- gCGAGagaaGCGGCCGcgGAGGCCUg--- -3'
miRNA:   3'- aGCUCg---CGCCGGUugUUUCGGAgaua -5'
24379 5' -54.7 NC_005264.1 + 67457 0.67 0.89097
Target:  5'- aCcAGCGCGGCCAGCucgugaaacccGAGGCCg---- -3'
miRNA:   3'- aGcUCGCGCCGGUUG-----------UUUCGGagaua -5'
24379 5' -54.7 NC_005264.1 + 69348 0.69 0.820308
Target:  5'- aCGAcGCGcCGGCCGccaGCAgcGCCUCa-- -3'
miRNA:   3'- aGCU-CGC-GCCGGU---UGUuuCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 70796 0.66 0.933013
Target:  5'- -gGAGCGCGGCCcACcGA-CCUCc-- -3'
miRNA:   3'- agCUCGCGCCGGuUGuUUcGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 76708 0.69 0.793281
Target:  5'- -gGAGCGCGGCgCAACuc-GCUUCg-- -3'
miRNA:   3'- agCUCGCGCCG-GUUGuuuCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 76850 0.7 0.783957
Target:  5'- cCGAGCGCGGCUuaguauACGuGGaCCUCg-- -3'
miRNA:   3'- aGCUCGCGCCGGu-----UGUuUC-GGAGaua -5'
24379 5' -54.7 NC_005264.1 + 79963 0.66 0.918808
Target:  5'- aUGAGCGCgacGGCCAGCAAacagagaccgaugccGGCCg---- -3'
miRNA:   3'- aGCUCGCG---CCGGUUGUU---------------UCGGagaua -5'
24379 5' -54.7 NC_005264.1 + 80643 0.67 0.910464
Target:  5'- -gGAcGCGCGGCCAcgACAcGGCCgcUCUu- -3'
miRNA:   3'- agCU-CGCGCCGGU--UGUuUCGG--AGAua -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.