miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24379 5' -54.7 NC_005264.1 + 129637 0.67 0.903569
Target:  5'- cCGAGCGCcGCCAGCcuuAAGCguaauagCUCUGc -3'
miRNA:   3'- aGCUCGCGcCGGUUGu--UUCG-------GAGAUa -5'
24379 5' -54.7 NC_005264.1 + 129605 0.7 0.745337
Target:  5'- gCG-GCGCGG-CGGCGAAGCUUCUc- -3'
miRNA:   3'- aGCuCGCGCCgGUUGUUUCGGAGAua -5'
24379 5' -54.7 NC_005264.1 + 128894 0.68 0.861691
Target:  5'- aUCGGGCGCGGucCCGGCGcgccacGGCCUUc-- -3'
miRNA:   3'- -AGCUCGCGCC--GGUUGUu-----UCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 128111 0.68 0.837452
Target:  5'- aCGAGCGauGCCAGCuGGGGCCgaaUAUg -3'
miRNA:   3'- aGCUCGCgcCGGUUG-UUUCGGag-AUA- -5'
24379 5' -54.7 NC_005264.1 + 127810 0.68 0.876785
Target:  5'- gCGGGCGuCGGCCAGgAcGGCCa---- -3'
miRNA:   3'- aGCUCGC-GCCGGUUgUuUCGGagaua -5'
24379 5' -54.7 NC_005264.1 + 127244 0.68 0.876785
Target:  5'- -gGAGaCGCGGCCAucggcCGAAGCCg---- -3'
miRNA:   3'- agCUC-GCGCCGGUu----GUUUCGGagaua -5'
24379 5' -54.7 NC_005264.1 + 126304 0.67 0.89097
Target:  5'- uUCGGgcGCGCGGCCGAU--GGCUcCUGc -3'
miRNA:   3'- -AGCU--CGCGCCGGUUGuuUCGGaGAUa -5'
24379 5' -54.7 NC_005264.1 + 126148 0.67 0.910464
Target:  5'- cCGuuAGCGcCGGCCGACuGAGCCg---- -3'
miRNA:   3'- aGC--UCGC-GCCGGUUGuUUCGGagaua -5'
24379 5' -54.7 NC_005264.1 + 125838 0.67 0.910464
Target:  5'- gUUGuuGCuGUGGCCAGCAGGGCUgCUGa -3'
miRNA:   3'- -AGCu-CG-CGCCGGUUGUUUCGGaGAUa -5'
24379 5' -54.7 NC_005264.1 + 125496 1.06 0.005537
Target:  5'- uUCGAGCGCGGCCAACAAAGCCUCUAUc -3'
miRNA:   3'- -AGCUCGCGCCGGUUGUUUCGGAGAUA- -5'
24379 5' -54.7 NC_005264.1 + 124297 0.66 0.927749
Target:  5'- gCGAGuCGCGGCCGgacgGCGGGGCggcggCUGa -3'
miRNA:   3'- aGCUC-GCGCCGGU----UGUUUCGga---GAUa -5'
24379 5' -54.7 NC_005264.1 + 123117 0.66 0.916473
Target:  5'- aCGGGCggcgucGCGGCaCGACGGGGCCg---- -3'
miRNA:   3'- aGCUCG------CGCCG-GUUGUUUCGGagaua -5'
24379 5' -54.7 NC_005264.1 + 116417 0.73 0.580434
Target:  5'- gUCGAGCGCaGGgCGGCGugcAGCCUCg-- -3'
miRNA:   3'- -AGCUCGCG-CCgGUUGUu--UCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 109910 0.74 0.509349
Target:  5'- gCGGGCGCGGCCAuGCAAuGCCcCUc- -3'
miRNA:   3'- aGCUCGCGCCGGU-UGUUuCGGaGAua -5'
24379 5' -54.7 NC_005264.1 + 108609 0.7 0.764892
Target:  5'- gCGcGCGgGGCCGccucgACAcAGGCCUCUAUu -3'
miRNA:   3'- aGCuCGCgCCGGU-----UGU-UUCGGAGAUA- -5'
24379 5' -54.7 NC_005264.1 + 105863 0.74 0.53944
Target:  5'- gCGAGCGCGGgCGACGAGGgaCUCg-- -3'
miRNA:   3'- aGCUCGCGCCgGUUGUUUCg-GAGaua -5'
24379 5' -54.7 NC_005264.1 + 102836 0.66 0.933013
Target:  5'- cUUGGGcCGCGGCC-ACGcGGCCgUCUc- -3'
miRNA:   3'- -AGCUC-GCGCCGGuUGUuUCGG-AGAua -5'
24379 5' -54.7 NC_005264.1 + 102128 0.72 0.642921
Target:  5'- aCGAGgcCGCGGCCAACAAccugcuGaCCUCUGc -3'
miRNA:   3'- aGCUC--GCGCCGGUUGUUu-----C-GGAGAUa -5'
24379 5' -54.7 NC_005264.1 + 98015 0.67 0.904208
Target:  5'- aCGcauGGUGCuGGCCGACuucAGCCUCg-- -3'
miRNA:   3'- aGC---UCGCG-CCGGUUGuu-UCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 97097 0.67 0.910464
Target:  5'- aCG-GCGgucguuaaCGGCCAGCGcgaguuGGCCUCUGa -3'
miRNA:   3'- aGCuCGC--------GCCGGUUGUu-----UCGGAGAUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.