miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24379 5' -54.7 NC_005264.1 + 144676 0.67 0.89097
Target:  5'- cCGAGCGuCaGCCGACAAGccuGUCUCUu- -3'
miRNA:   3'- aGCUCGC-GcCGGUUGUUU---CGGAGAua -5'
24379 5' -54.7 NC_005264.1 + 67457 0.67 0.89097
Target:  5'- aCcAGCGCGGCCAGCucgugaaacccGAGGCCg---- -3'
miRNA:   3'- aGcUCGCGCCGGUUG-----------UUUCGGagaua -5'
24379 5' -54.7 NC_005264.1 + 8784 0.68 0.876785
Target:  5'- gCGGGCGuCGGCCAGgAcGGCCa---- -3'
miRNA:   3'- aGCUCGC-GCCGGUUgUuUCGGagaua -5'
24379 5' -54.7 NC_005264.1 + 8217 0.68 0.876785
Target:  5'- -gGAGaCGCGGCCAucggcCGAAGCCg---- -3'
miRNA:   3'- agCUC-GCGCCGGUu----GUUUCGGagaua -5'
24379 5' -54.7 NC_005264.1 + 127810 0.68 0.876785
Target:  5'- gCGGGCGuCGGCCAGgAcGGCCa---- -3'
miRNA:   3'- aGCUCGC-GCCGGUUgUuUCGGagaua -5'
24379 5' -54.7 NC_005264.1 + 127244 0.68 0.876785
Target:  5'- -gGAGaCGCGGCCAucggcCGAAGCCg---- -3'
miRNA:   3'- agCUC-GCGCCGGUu----GUUUCGGagaua -5'
24379 5' -54.7 NC_005264.1 + 128894 0.68 0.861691
Target:  5'- aUCGGGCGCGGucCCGGCGcgccacGGCCUUc-- -3'
miRNA:   3'- -AGCUCGCGCC--GGUUGUu-----UCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 9868 0.68 0.861691
Target:  5'- aUCGGGCGCGGucCCGGCGcgccacGGCCUUc-- -3'
miRNA:   3'- -AGCUCGCGCC--GGUUGUu-----UCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 35279 0.68 0.861691
Target:  5'- gCGGGCGCGGCCGu---GGUC-CUGa -3'
miRNA:   3'- aGCUCGCGCCGGUuguuUCGGaGAUa -5'
24379 5' -54.7 NC_005264.1 + 58269 0.68 0.853818
Target:  5'- uUCGAGCccGCuGCCuugGACAGAGCUUCUu- -3'
miRNA:   3'- -AGCUCG--CGcCGG---UUGUUUCGGAGAua -5'
24379 5' -54.7 NC_005264.1 + 34131 0.68 0.845736
Target:  5'- gUCGAGgCGCGaGCCcgccuccccCAAGGCCUCg-- -3'
miRNA:   3'- -AGCUC-GCGC-CGGuu-------GUUUCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 153158 0.68 0.845736
Target:  5'- gUCGAGgCGCGaGCCcgccuccccCAAGGCCUCg-- -3'
miRNA:   3'- -AGCUC-GCGC-CGGuu-------GUUUCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 87066 0.68 0.845736
Target:  5'- gCGAGCGCGaacgagaaccaGCC-ACAcAGCCUCg-- -3'
miRNA:   3'- aGCUCGCGC-----------CGGuUGUuUCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 9084 0.68 0.837452
Target:  5'- aCGAGCGauGCCAGCuGGGGCCgaaUAUg -3'
miRNA:   3'- aGCUCGCgcCGGUUG-UUUCGGag-AUA- -5'
24379 5' -54.7 NC_005264.1 + 39861 0.68 0.837452
Target:  5'- cCG-GCGCGGCCAggACGuu-CCUCUAc -3'
miRNA:   3'- aGCuCGCGCCGGU--UGUuucGGAGAUa -5'
24379 5' -54.7 NC_005264.1 + 158887 0.68 0.837452
Target:  5'- cCG-GCGCGGCCAggACGuu-CCUCUAc -3'
miRNA:   3'- aGCuCGCGCCGGU--UGUuucGGAGAUa -5'
24379 5' -54.7 NC_005264.1 + 128111 0.68 0.837452
Target:  5'- aCGAGCGauGCCAGCuGGGGCCgaaUAUg -3'
miRNA:   3'- aGCUCGCgcCGGUUG-UUUCGGag-AUA- -5'
24379 5' -54.7 NC_005264.1 + 69348 0.69 0.820308
Target:  5'- aCGAcGCGcCGGCCGccaGCAgcGCCUCa-- -3'
miRNA:   3'- aGCU-CGC-GCCGGU---UGUuuCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 5144 0.69 0.819432
Target:  5'- cUCGAuGCGCGGCCGcgccGCAucguccgAAGCCUa--- -3'
miRNA:   3'- -AGCU-CGCGCCGGU----UGU-------UUCGGAgaua -5'
24379 5' -54.7 NC_005264.1 + 84473 0.69 0.811466
Target:  5'- aUCGGGUGCGGCUgcuACGcucuGGGCCUuaCUAUg -3'
miRNA:   3'- -AGCUCGCGCCGGu--UGU----UUCGGA--GAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.