miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24379 5' -54.7 NC_005264.1 + 4090 0.66 0.916473
Target:  5'- aCGGGCggcgucGCGGCaCGACGGGGCCg---- -3'
miRNA:   3'- aGCUCG------CGCCG-GUUGUUUCGGagaua -5'
24379 5' -54.7 NC_005264.1 + 123117 0.66 0.916473
Target:  5'- aCGGGCggcgucGCGGCaCGACGGGGCCg---- -3'
miRNA:   3'- aGCUCG------CGCCG-GUUGUUUCGGagaua -5'
24379 5' -54.7 NC_005264.1 + 43908 0.66 0.916473
Target:  5'- aCGAuaGCGCGGCCGuc---GCCUCg-- -3'
miRNA:   3'- aGCU--CGCGCCGGUuguuuCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 154813 0.67 0.910464
Target:  5'- -aGGGCGCGGUgGcgccgucgugGCGGGcGCCUCUGc -3'
miRNA:   3'- agCUCGCGCCGgU----------UGUUU-CGGAGAUa -5'
24379 5' -54.7 NC_005264.1 + 159420 0.67 0.910464
Target:  5'- gCGGGCGCGGCCcuACGuc-CCUCc-- -3'
miRNA:   3'- aGCUCGCGCCGGu-UGUuucGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 97097 0.67 0.910464
Target:  5'- aCG-GCGgucguuaaCGGCCAGCGcgaguuGGCCUCUGa -3'
miRNA:   3'- aGCuCGC--------GCCGGUUGUu-----UCGGAGAUa -5'
24379 5' -54.7 NC_005264.1 + 126148 0.67 0.910464
Target:  5'- cCGuuAGCGcCGGCCGACuGAGCCg---- -3'
miRNA:   3'- aGC--UCGC-GCCGGUUGuUUCGGagaua -5'
24379 5' -54.7 NC_005264.1 + 40393 0.67 0.910464
Target:  5'- gCGGGCGCGGCCcuACGuc-CCUCc-- -3'
miRNA:   3'- aGCUCGCGCCGGu-UGUuucGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 125838 0.67 0.910464
Target:  5'- gUUGuuGCuGUGGCCAGCAGGGCUgCUGa -3'
miRNA:   3'- -AGCu-CG-CGCCGGUUGUUUCGGaGAUa -5'
24379 5' -54.7 NC_005264.1 + 35787 0.67 0.910464
Target:  5'- -aGGGCGCGGUgGcgccgucgugGCGGGcGCCUCUGc -3'
miRNA:   3'- agCUCGCGCCGgU----------UGUUU-CGGAGAUa -5'
24379 5' -54.7 NC_005264.1 + 7121 0.67 0.910464
Target:  5'- cCGuuAGCGcCGGCCGACuGAGCCg---- -3'
miRNA:   3'- aGC--UCGC-GCCGGUUGuUUCGGagaua -5'
24379 5' -54.7 NC_005264.1 + 80643 0.67 0.910464
Target:  5'- -gGAcGCGCGGCCAcgACAcGGCCgcUCUu- -3'
miRNA:   3'- agCU-CGCGCCGGU--UGUuUCGG--AGAua -5'
24379 5' -54.7 NC_005264.1 + 98015 0.67 0.904208
Target:  5'- aCGcauGGUGCuGGCCGACuucAGCCUCg-- -3'
miRNA:   3'- aGC---UCGCG-CCGGUUGuu-UCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 63631 0.67 0.904208
Target:  5'- gCGAGagaaGCGGCCGcgGAGGCCUg--- -3'
miRNA:   3'- aGCUCg---CGCCGGUugUUUCGGAgaua -5'
24379 5' -54.7 NC_005264.1 + 129637 0.67 0.903569
Target:  5'- cCGAGCGCcGCCAGCcuuAAGCguaauagCUCUGc -3'
miRNA:   3'- aGCUCGCGcCGGUUGu--UUCG-------GAGAUa -5'
24379 5' -54.7 NC_005264.1 + 26392 0.67 0.897709
Target:  5'- cUGAGCGCGGCCu-CAgcGCC-Ca-- -3'
miRNA:   3'- aGCUCGCGCCGGuuGUuuCGGaGaua -5'
24379 5' -54.7 NC_005264.1 + 38610 0.67 0.897709
Target:  5'- cCGAGCGCGGCgAAgGGguuAGCCa---- -3'
miRNA:   3'- aGCUCGCGCCGgUUgUU---UCGGagaua -5'
24379 5' -54.7 NC_005264.1 + 42953 0.67 0.89097
Target:  5'- cCGGGCGCGGC-AAC---GCCUCg-- -3'
miRNA:   3'- aGCUCGCGCCGgUUGuuuCGGAGaua -5'
24379 5' -54.7 NC_005264.1 + 67457 0.67 0.89097
Target:  5'- aCcAGCGCGGCCAGCucgugaaacccGAGGCCg---- -3'
miRNA:   3'- aGcUCGCGCCGGUUG-----------UUUCGGagaua -5'
24379 5' -54.7 NC_005264.1 + 161980 0.67 0.89097
Target:  5'- cCGGGCGCGGC-AAC---GCCUCg-- -3'
miRNA:   3'- aGCUCGCGCCGgUUGuuuCGGAGaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.