miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24380 3' -61 NC_005264.1 + 28362 0.68 0.554356
Target:  5'- aCGCGCAAUUGGaguGCgGCagaauugUCCCCCAu -3'
miRNA:   3'- -GCGCGUUGACCgauUGgCG-------GGGGGGU- -5'
24380 3' -61 NC_005264.1 + 34118 0.68 0.56505
Target:  5'- gGCGCGaaacaGCgucgaGGCgcgAGcCCGCCuCCCCCAa -3'
miRNA:   3'- gCGCGU-----UGa----CCGa--UU-GGCGG-GGGGGU- -5'
24380 3' -61 NC_005264.1 + 34909 0.66 0.71254
Target:  5'- aGgGCAggguuACUGGCccaGugCGCCCgCCUCAg -3'
miRNA:   3'- gCgCGU-----UGACCGa--UugGCGGG-GGGGU- -5'
24380 3' -61 NC_005264.1 + 36548 0.68 0.583643
Target:  5'- cCGCGCGcccgaaaGC-GGCaUGGCCGCCUCCgCGg -3'
miRNA:   3'- -GCGCGU-------UGaCCG-AUUGGCGGGGGgGU- -5'
24380 3' -61 NC_005264.1 + 36976 0.72 0.346071
Target:  5'- uGCGC-GCUGGCgccauagucGCCGCCgCCUCCGg -3'
miRNA:   3'- gCGCGuUGACCGau-------UGGCGG-GGGGGU- -5'
24380 3' -61 NC_005264.1 + 37672 0.74 0.270866
Target:  5'- uGCGCGACgGGCgcgcGGCCcucGCCCUCCCGc -3'
miRNA:   3'- gCGCGUUGaCCGa---UUGG---CGGGGGGGU- -5'
24380 3' -61 NC_005264.1 + 37786 0.68 0.594463
Target:  5'- uCGCGCcgUUGGUUuuCCccggaGCCUCCCCGc -3'
miRNA:   3'- -GCGCGuuGACCGAuuGG-----CGGGGGGGU- -5'
24380 3' -61 NC_005264.1 + 40983 0.7 0.47973
Target:  5'- aGCGCGACcGGCccuCCGCCaaCCCGu -3'
miRNA:   3'- gCGCGUUGaCCGauuGGCGGggGGGU- -5'
24380 3' -61 NC_005264.1 + 42655 0.69 0.526471
Target:  5'- gCGCGCcggcaGACUGGCggccgGAUCGUCCCgugcgCCCGu -3'
miRNA:   3'- -GCGCG-----UUGACCGa----UUGGCGGGG-----GGGU- -5'
24380 3' -61 NC_005264.1 + 46159 0.67 0.614211
Target:  5'- aCGCGUguuuguccccugGAUcGGC-GGCCGCCCCgCCAu -3'
miRNA:   3'- -GCGCG------------UUGaCCGaUUGGCGGGGgGGU- -5'
24380 3' -61 NC_005264.1 + 48153 0.71 0.417947
Target:  5'- cCGCGCAauccuGCUcGGCgUGGCUGCaCCCCCGc -3'
miRNA:   3'- -GCGCGU-----UGA-CCG-AUUGGCGgGGGGGU- -5'
24380 3' -61 NC_005264.1 + 51420 0.71 0.392989
Target:  5'- aCGCGCAugguuuCcGGCaGGCCGCCCUCCaCGa -3'
miRNA:   3'- -GCGCGUu-----GaCCGaUUGGCGGGGGG-GU- -5'
24380 3' -61 NC_005264.1 + 52691 0.71 0.392989
Target:  5'- aGcCGCGGCgGGUUucGCCGCCCgCCCCc -3'
miRNA:   3'- gC-GCGUUGaCCGAu-UGGCGGG-GGGGu -5'
24380 3' -61 NC_005264.1 + 53261 0.68 0.584625
Target:  5'- gGCGCGuguCUGGCUuGCUGUCCCgCg- -3'
miRNA:   3'- gCGCGUu--GACCGAuUGGCGGGGgGgu -5'
24380 3' -61 NC_005264.1 + 56332 0.66 0.673529
Target:  5'- uCGCGuCGACgUGGCgga--GCCCCCCa- -3'
miRNA:   3'- -GCGC-GUUG-ACCGauuggCGGGGGGgu -5'
24380 3' -61 NC_005264.1 + 57990 0.66 0.702863
Target:  5'- cCGCGCGGCggccgUGGCUcAGCgGCCCCg--- -3'
miRNA:   3'- -GCGCGUUG-----ACCGA-UUGgCGGGGgggu -5'
24380 3' -61 NC_005264.1 + 58763 0.81 0.096713
Target:  5'- aGCGCGAUgaugGGCUcgccguaaucgucGACCGCCCCCCUg -3'
miRNA:   3'- gCGCGUUGa---CCGA-------------UUGGCGGGGGGGu -5'
24380 3' -61 NC_005264.1 + 58900 0.68 0.555326
Target:  5'- uCGCGCAuaGC-GGau-GCCGCCUCCUCGa -3'
miRNA:   3'- -GCGCGU--UGaCCgauUGGCGGGGGGGU- -5'
24380 3' -61 NC_005264.1 + 60058 0.68 0.604327
Target:  5'- uCGCGCAACacuaGGCcaccgAACUgGCCCgCCCCu -3'
miRNA:   3'- -GCGCGUUGa---CCGa----UUGG-CGGG-GGGGu -5'
24380 3' -61 NC_005264.1 + 60676 0.67 0.64391
Target:  5'- uCGCGCAGCUgGGCUc-CCaagGCCUCCgCAg -3'
miRNA:   3'- -GCGCGUUGA-CCGAuuGG---CGGGGGgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.