miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24380 3' -61 NC_005264.1 + 644 0.77 0.172563
Target:  5'- aGCGCGAUagaGGCUcACgCGCCCCCCCc -3'
miRNA:   3'- gCGCGUUGa--CCGAuUG-GCGGGGGGGu -5'
24380 3' -61 NC_005264.1 + 767 0.67 0.64391
Target:  5'- gCGCGCGAgaGGUUu-CUGCUaCCCCCu -3'
miRNA:   3'- -GCGCGUUgaCCGAuuGGCGG-GGGGGu -5'
24380 3' -61 NC_005264.1 + 818 0.68 0.59742
Target:  5'- uGCGCGGCcGGCUuuagccucugucucuGGcgugccccacgauCCGCCuCCCCCAu -3'
miRNA:   3'- gCGCGUUGaCCGA---------------UU-------------GGCGG-GGGGGU- -5'
24380 3' -61 NC_005264.1 + 1948 0.67 0.653801
Target:  5'- uGCGCGGCc-GUUGcCCcCCCCCCCGa -3'
miRNA:   3'- gCGCGUUGacCGAUuGGcGGGGGGGU- -5'
24380 3' -61 NC_005264.1 + 3074 0.66 0.722153
Target:  5'- uCGcCGCGACUGGCggcGGCCGaggaCCCguucgggcgauuCCCGg -3'
miRNA:   3'- -GC-GCGUUGACCGa--UUGGCg---GGG------------GGGU- -5'
24380 3' -61 NC_005264.1 + 7730 0.66 0.702863
Target:  5'- uGCGCAuggccauauGCagGGUUAACaugcuugGCCUCCCCAc -3'
miRNA:   3'- gCGCGU---------UGa-CCGAUUGg------CGGGGGGGU- -5'
24380 3' -61 NC_005264.1 + 8716 0.67 0.614211
Target:  5'- gCGCGCGcgUGGCc-GCCGUuucggcucgCCCCCCGu -3'
miRNA:   3'- -GCGCGUugACCGauUGGCG---------GGGGGGU- -5'
24380 3' -61 NC_005264.1 + 9470 0.71 0.4012
Target:  5'- uCGCGCAACgcuucGcGCgucuugucuGCCGCCuCCCCCGu -3'
miRNA:   3'- -GCGCGUUGa----C-CGau-------UGGCGG-GGGGGU- -5'
24380 3' -61 NC_005264.1 + 11058 0.71 0.4012
Target:  5'- aGUGCGaaagugACguaGGCggguGCCGCCCCCUCAa -3'
miRNA:   3'- gCGCGU------UGa--CCGau--UGGCGGGGGGGU- -5'
24380 3' -61 NC_005264.1 + 12118 0.72 0.376897
Target:  5'- gCGCGCGACcuuUGGCgGGCaGCCCCgCCGa -3'
miRNA:   3'- -GCGCGUUG---ACCGaUUGgCGGGGgGGU- -5'
24380 3' -61 NC_005264.1 + 13235 0.67 0.667621
Target:  5'- aGCGCAGCgaccgcaaagacucGGCaucgAGCaGCCCCCCUc -3'
miRNA:   3'- gCGCGUUGa-------------CCGa---UUGgCGGGGGGGu -5'
24380 3' -61 NC_005264.1 + 13402 0.66 0.69313
Target:  5'- cCGcCGCAGCUcuccgcaccGGCgcgcGACCGCCgCCgCCGa -3'
miRNA:   3'- -GC-GCGUUGA---------CCGa---UUGGCGGgGG-GGU- -5'
24380 3' -61 NC_005264.1 + 14399 0.68 0.604327
Target:  5'- uCGCGCAGCgUGGUauaacuCCGUCCCacgCCCGu -3'
miRNA:   3'- -GCGCGUUG-ACCGauu---GGCGGGG---GGGU- -5'
24380 3' -61 NC_005264.1 + 16078 0.67 0.634009
Target:  5'- cCGCGCGGCgcuuGCUGuugccggguCCGCCgCCCUCGu -3'
miRNA:   3'- -GCGCGUUGac--CGAUu--------GGCGG-GGGGGU- -5'
24380 3' -61 NC_005264.1 + 16105 0.67 0.64391
Target:  5'- uGCGCGGCcgGGUUcuuuCUGCCCCgCUCAu -3'
miRNA:   3'- gCGCGUUGa-CCGAuu--GGCGGGG-GGGU- -5'
24380 3' -61 NC_005264.1 + 17898 0.72 0.338652
Target:  5'- gCGCGCAcaGCa-GCUGAUCaGCCCCCCUAg -3'
miRNA:   3'- -GCGCGU--UGacCGAUUGG-CGGGGGGGU- -5'
24380 3' -61 NC_005264.1 + 18341 0.66 0.673529
Target:  5'- uCGUccccCAACUGGCgaagaUGCUCCCCCAu -3'
miRNA:   3'- -GCGc---GUUGACCGauug-GCGGGGGGGU- -5'
24380 3' -61 NC_005264.1 + 24361 0.68 0.604327
Target:  5'- cCGcCGCu-CUGGCaUGACCggcuucgcgGCUCCCCCGg -3'
miRNA:   3'- -GC-GCGuuGACCG-AUUGG---------CGGGGGGGU- -5'
24380 3' -61 NC_005264.1 + 24414 0.67 0.614211
Target:  5'- gCGCGCGGC-GcGUUAAacaCGCCCgCCCGg -3'
miRNA:   3'- -GCGCGUUGaC-CGAUUg--GCGGGgGGGU- -5'
24380 3' -61 NC_005264.1 + 27682 0.67 0.624107
Target:  5'- -aCGCGGCUGGCcu-CUGCCUCgCCGa -3'
miRNA:   3'- gcGCGUUGACCGauuGGCGGGGgGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.