miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24380 3' -61 NC_005264.1 + 124883 1.08 0.001233
Target:  5'- cCGCGCAACUGGCUAACCGCCCCCCCAu -3'
miRNA:   3'- -GCGCGUUGACCGAUUGGCGGGGGGGU- -5'
24380 3' -61 NC_005264.1 + 58763 0.81 0.096713
Target:  5'- aGCGCGAUgaugGGCUcgccguaaucgucGACCGCCCCCCUg -3'
miRNA:   3'- gCGCGUUGa---CCGA-------------UUGGCGGGGGGGu -5'
24380 3' -61 NC_005264.1 + 644 0.77 0.172563
Target:  5'- aGCGCGAUagaGGCUcACgCGCCCCCCCc -3'
miRNA:   3'- gCGCGUUGa--CCGAuUG-GCGGGGGGGu -5'
24380 3' -61 NC_005264.1 + 119671 0.77 0.172563
Target:  5'- aGCGCGAUagaGGCUcACgCGCCCCCCCc -3'
miRNA:   3'- gCGCGUUGa--CCGAuUG-GCGGGGGGGu -5'
24380 3' -61 NC_005264.1 + 93616 0.77 0.181187
Target:  5'- gGCGCAGCUGGCcgcugAGCUGUCCUCCgCAu -3'
miRNA:   3'- gCGCGUUGACCGa----UUGGCGGGGGG-GU- -5'
24380 3' -61 NC_005264.1 + 77927 0.76 0.204431
Target:  5'- cCGCGC--CUGGCUcuucCCGCCCUCCCGu -3'
miRNA:   3'- -GCGCGuuGACCGAuu--GGCGGGGGGGU- -5'
24380 3' -61 NC_005264.1 + 37672 0.74 0.270866
Target:  5'- uGCGCGACgGGCgcgcGGCCcucGCCCUCCCGc -3'
miRNA:   3'- gCGCGUUGaCCGa---UUGG---CGGGGGGGU- -5'
24380 3' -61 NC_005264.1 + 156698 0.74 0.270866
Target:  5'- uGCGCGACgGGCgcgcGGCCcucGCCCUCCCGc -3'
miRNA:   3'- gCGCGUUGaCCGa---UUGG---CGGGGGGGU- -5'
24380 3' -61 NC_005264.1 + 135403 0.73 0.331349
Target:  5'- gGCGCAGguCUGGCUGAaaGCCucaucaugCCCCCGa -3'
miRNA:   3'- gCGCGUU--GACCGAUUggCGG--------GGGGGU- -5'
24380 3' -61 NC_005264.1 + 17898 0.72 0.338652
Target:  5'- gCGCGCAcaGCa-GCUGAUCaGCCCCCCUAg -3'
miRNA:   3'- -GCGCGU--UGacCGAUUGG-CGGGGGGGU- -5'
24380 3' -61 NC_005264.1 + 118690 0.72 0.346071
Target:  5'- aCGCGCucGCgcGGCUuACCuGCCCUCCCGc -3'
miRNA:   3'- -GCGCGu-UGa-CCGAuUGG-CGGGGGGGU- -5'
24380 3' -61 NC_005264.1 + 36976 0.72 0.346071
Target:  5'- uGCGC-GCUGGCgccauagucGCCGCCgCCUCCGg -3'
miRNA:   3'- gCGCGuUGACCGau-------UGGCGG-GGGGGU- -5'
24380 3' -61 NC_005264.1 + 156003 0.72 0.346071
Target:  5'- uGCGC-GCUGGCgccauagucGCCGCCgCCUCCGg -3'
miRNA:   3'- gCGCGuUGACCGau-------UGGCGG-GGGGGU- -5'
24380 3' -61 NC_005264.1 + 12118 0.72 0.376897
Target:  5'- gCGCGCGACcuuUGGCgGGCaGCCCCgCCGa -3'
miRNA:   3'- -GCGCGUUG---ACCGaUUGgCGGGGgGGU- -5'
24380 3' -61 NC_005264.1 + 131145 0.72 0.376897
Target:  5'- gCGCGCGACcuuUGGCgGGCaGCCCCgCCGa -3'
miRNA:   3'- -GCGCGUUG---ACCGaUUGgCGGGGgGGU- -5'
24380 3' -61 NC_005264.1 + 102526 0.71 0.384887
Target:  5'- gGCGCuaauuGACUGGCUcACCGCCUUCUUg -3'
miRNA:   3'- gCGCG-----UUGACCGAuUGGCGGGGGGGu -5'
24380 3' -61 NC_005264.1 + 51420 0.71 0.392989
Target:  5'- aCGCGCAugguuuCcGGCaGGCCGCCCUCCaCGa -3'
miRNA:   3'- -GCGCGUu-----GaCCGaUUGGCGGGGGG-GU- -5'
24380 3' -61 NC_005264.1 + 91209 0.71 0.392989
Target:  5'- uCGCGC-ACUGgGCUAucucuGCCGCCgCCUCGc -3'
miRNA:   3'- -GCGCGuUGAC-CGAU-----UGGCGGgGGGGU- -5'
24380 3' -61 NC_005264.1 + 52691 0.71 0.392989
Target:  5'- aGcCGCGGCgGGUUucGCCGCCCgCCCCc -3'
miRNA:   3'- gC-GCGUUGaCCGAu-UGGCGGG-GGGGu -5'
24380 3' -61 NC_005264.1 + 9470 0.71 0.4012
Target:  5'- uCGCGCAACgcuucGcGCgucuugucuGCCGCCuCCCCCGu -3'
miRNA:   3'- -GCGCGUUGa----C-CGau-------UGGCGG-GGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.