Results 1 - 20 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24381 | 5' | -50 | NC_005264.1 | + | 48668 | 0.66 | 0.997544 |
Target: 5'- -aCGggGGGCG-AGGAGAucuGGGCGCGa -3' miRNA: 3'- uaGUa-UCUGCaUCCUCUcu-UUCGCGC- -5' |
|||||||
24381 | 5' | -50 | NC_005264.1 | + | 42678 | 0.66 | 0.997501 |
Target: 5'- gAUCGUcc-CGUgcgcccguccgucAGaGAGAGAGAGCGCGa -3' miRNA: 3'- -UAGUAucuGCA-------------UC-CUCUCUUUCGCGC- -5' |
|||||||
24381 | 5' | -50 | NC_005264.1 | + | 161704 | 0.66 | 0.997501 |
Target: 5'- gAUCGUcc-CGUgcgcccguccgucAGaGAGAGAGAGCGCGa -3' miRNA: 3'- -UAGUAucuGCA-------------UC-CUCUCUUUCGCGC- -5' |
|||||||
24381 | 5' | -50 | NC_005264.1 | + | 38165 | 0.66 | 0.997275 |
Target: 5'- uUCAgaUAGugG-AGGGGGGAAAuaucguaaaguccuuGCGCGu -3' miRNA: 3'- uAGU--AUCugCaUCCUCUCUUU---------------CGCGC- -5' |
|||||||
24381 | 5' | -50 | NC_005264.1 | + | 15430 | 0.66 | 0.996551 |
Target: 5'- cUCGUGGcGCGaUGGGAGcucaugaguguGGAcAAGCGCGa -3' miRNA: 3'- uAGUAUC-UGC-AUCCUC-----------UCU-UUCGCGC- -5' |
|||||||
24381 | 5' | -50 | NC_005264.1 | + | 54113 | 0.66 | 0.996551 |
Target: 5'- ----aAGAUGUcaguGGAGAGuucGAGCGCGc -3' miRNA: 3'- uaguaUCUGCAu---CCUCUCu--UUCGCGC- -5' |
|||||||
24381 | 5' | -50 | NC_005264.1 | + | 155277 | 0.66 | 0.995941 |
Target: 5'- --gGUAGGCGgcGGGGAcGAugauguAGCGUGg -3' miRNA: 3'- uagUAUCUGCauCCUCU-CUu-----UCGCGC- -5' |
|||||||
24381 | 5' | -50 | NC_005264.1 | + | 43896 | 0.66 | 0.995941 |
Target: 5'- ----gGGGCGccGGAGAcGAuAGCGCGg -3' miRNA: 3'- uaguaUCUGCauCCUCU-CUuUCGCGC- -5' |
|||||||
24381 | 5' | -50 | NC_005264.1 | + | 36287 | 0.67 | 0.994459 |
Target: 5'- -gCGUAGGCG-AGGAGAG--GGCGg- -3' miRNA: 3'- uaGUAUCUGCaUCCUCUCuuUCGCgc -5' |
|||||||
24381 | 5' | -50 | NC_005264.1 | + | 155314 | 0.67 | 0.994459 |
Target: 5'- -gCGUAGGCG-AGGAGAG--GGCGg- -3' miRNA: 3'- uaGUAUCUGCaUCCUCUCuuUCGCgc -5' |
|||||||
24381 | 5' | -50 | NC_005264.1 | + | 94520 | 0.67 | 0.993568 |
Target: 5'- cGUCGgccACGUGGGAGGGcagcGGCGCc -3' miRNA: 3'- -UAGUaucUGCAUCCUCUCuu--UCGCGc -5' |
|||||||
24381 | 5' | -50 | NC_005264.1 | + | 109619 | 0.67 | 0.993568 |
Target: 5'- -gCAaauGGCGUGGGc-GGggGGCGCGa -3' miRNA: 3'- uaGUau-CUGCAUCCucUCuuUCGCGC- -5' |
|||||||
24381 | 5' | -50 | NC_005264.1 | + | 43152 | 0.67 | 0.993568 |
Target: 5'- --gGUGGAgCG-GGGAgGGGggGGCGCGu -3' miRNA: 3'- uagUAUCU-GCaUCCU-CUCuuUCGCGC- -5' |
|||||||
24381 | 5' | -50 | NC_005264.1 | + | 162179 | 0.67 | 0.993568 |
Target: 5'- --gGUGGAgCG-GGGAgGGGggGGCGCGu -3' miRNA: 3'- uagUAUCU-GCaUCCU-CUCuuUCGCGC- -5' |
|||||||
24381 | 5' | -50 | NC_005264.1 | + | 108434 | 0.67 | 0.993568 |
Target: 5'- cUCGUAGcGCGUGGG-GAGAuuAGCGg- -3' miRNA: 3'- uAGUAUC-UGCAUCCuCUCUu-UCGCgc -5' |
|||||||
24381 | 5' | -50 | NC_005264.1 | + | 154209 | 0.67 | 0.992566 |
Target: 5'- -aCGUAGACGUGGcGGuG-AAGCGCc -3' miRNA: 3'- uaGUAUCUGCAUCcUCuCuUUCGCGc -5' |
|||||||
24381 | 5' | -50 | NC_005264.1 | + | 101173 | 0.67 | 0.991444 |
Target: 5'- --gAUAGGCG-AGGAGAucguGGAAGCGUu -3' miRNA: 3'- uagUAUCUGCaUCCUCU----CUUUCGCGc -5' |
|||||||
24381 | 5' | -50 | NC_005264.1 | + | 132325 | 0.67 | 0.991444 |
Target: 5'- gGUCGUggagcuccccggaGGACGgccgcgcggagcaggAGGAGAG-GGGCGCGa -3' miRNA: 3'- -UAGUA-------------UCUGCa--------------UCCUCUCuUUCGCGC- -5' |
|||||||
24381 | 5' | -50 | NC_005264.1 | + | 13298 | 0.67 | 0.991444 |
Target: 5'- gGUCGUggagcuccccggaGGACGgccgcgcggagcaggAGGAGAG-GGGCGCGa -3' miRNA: 3'- -UAGUA-------------UCUGCa--------------UCCUCUCuUUCGCGC- -5' |
|||||||
24381 | 5' | -50 | NC_005264.1 | + | 154793 | 0.68 | 0.987098 |
Target: 5'- -----cGACGUGGGuGAagaggcgGAGGGCGCGg -3' miRNA: 3'- uaguauCUGCAUCCuCU-------CUUUCGCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home