miRNA display CGI


Results 21 - 40 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 3' -52.3 NC_005264.1 + 43487 0.66 0.984999
Target:  5'- cUCGCuuGACAagAACcUCGggguCGCAGCGCUu -3'
miRNA:   3'- -AGUGugCUGU--UUGcAGU----GCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 157070 0.66 0.985696
Target:  5'- -uGCACGACGGucGCGUgggucUcccagcuuuuuucuuGCGCGGCGUCa -3'
miRNA:   3'- agUGUGCUGUU--UGCA-----G---------------UGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 98204 0.66 0.988241
Target:  5'- cUUAUugGACuacugcaacGGCGUCGgGCcGCGCUg -3'
miRNA:   3'- -AGUGugCUGu--------UUGCAGUgCGuCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 33294 0.66 0.987944
Target:  5'- cCACGCGGCGAcgccuaagcccacGCccgcagugguuccGUCGCcucCGGCGCCg -3'
miRNA:   3'- aGUGUGCUGUU-------------UG-------------CAGUGc--GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 54391 0.66 0.982751
Target:  5'- cCGCGCgGAUAAuaaagaagucguUGUUGCGCGGCGCg -3'
miRNA:   3'- aGUGUG-CUGUUu-----------GCAGUGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 11648 0.66 0.986696
Target:  5'- -aGCGCGGCAGGgcugcugucguCGUCGCGCAauuCGaCCg -3'
miRNA:   3'- agUGUGCUGUUU-----------GCAGUGCGUc--GC-GG- -5'
24382 3' -52.3 NC_005264.1 + 17332 0.66 0.984999
Target:  5'- gUUGC-CGugG-ACGUC-UGCAGUGCCu -3'
miRNA:   3'- -AGUGuGCugUuUGCAGuGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 79913 0.66 0.986696
Target:  5'- -uGCGCGugGccGACGUC-UGCGGCGg- -3'
miRNA:   3'- agUGUGCugU--UUGCAGuGCGUCGCgg -5'
24382 3' -52.3 NC_005264.1 + 146512 0.66 0.988241
Target:  5'- cCGCGCGGuucCAGagcuacGCGUCGagagUGCGGCGCa -3'
miRNA:   3'- aGUGUGCU---GUU------UGCAGU----GCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 104993 0.66 0.986696
Target:  5'- -gGCGCuGACGAcCGUU-UGCAGCGCa -3'
miRNA:   3'- agUGUG-CUGUUuGCAGuGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 23034 0.66 0.989643
Target:  5'- gUCcCGCGACGgccGACGgCACGCGuucGUGCUu -3'
miRNA:   3'- -AGuGUGCUGU---UUGCaGUGCGU---CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 123691 0.66 0.983142
Target:  5'- -aGCACGAuCAGggaauaccuGCGUCGgggcgaGUGGCGCCg -3'
miRNA:   3'- agUGUGCU-GUU---------UGCAGUg-----CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 38658 0.66 0.989643
Target:  5'- gUCGa--GAUGAugGcCGCgGCGGCGCCc -3'
miRNA:   3'- -AGUgugCUGUUugCaGUG-CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 152004 0.66 0.986696
Target:  5'- -gACACG-CGGGC-UCGCGCAuauCGCCa -3'
miRNA:   3'- agUGUGCuGUUUGcAGUGCGUc--GCGG- -5'
24382 3' -52.3 NC_005264.1 + 38524 0.66 0.983142
Target:  5'- --uCugGACAGGauuagCGCGCAGUGUCa -3'
miRNA:   3'- aguGugCUGUUUgca--GUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 117513 0.66 0.986696
Target:  5'- -gGCGCGGC--GCGUC-UGCGGuCGCUc -3'
miRNA:   3'- agUGUGCUGuuUGCAGuGCGUC-GCGG- -5'
24382 3' -52.3 NC_005264.1 + 19407 0.66 0.986696
Target:  5'- -gACAUGAUggGgGagGCGaGGCGCCg -3'
miRNA:   3'- agUGUGCUGuuUgCagUGCgUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 136113 0.66 0.989643
Target:  5'- -gACgACGACGAauaacgacGCGgggaGCGCAuGCGCCc -3'
miRNA:   3'- agUG-UGCUGUU--------UGCag--UGCGU-CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 98641 0.66 0.988241
Target:  5'- gUCACuuCGACccGGACGUCAgacgaacggUGuCGGCGCUa -3'
miRNA:   3'- -AGUGu-GCUG--UUUGCAGU---------GC-GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 69791 0.66 0.984999
Target:  5'- cCGCAUGGC-AGCGcagcagCACGCauucGGCGCg -3'
miRNA:   3'- aGUGUGCUGuUUGCa-----GUGCG----UCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.