miRNA display CGI


Results 1 - 20 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 3' -52.3 NC_005264.1 + 79885 0.65 0.990668
Target:  5'- -gGCGCGGCGgcgaccgucgcaggcGACGUCGCaauguaaccaagaugGCAG-GCCa -3'
miRNA:   3'- agUGUGCUGU---------------UUGCAGUG---------------CGUCgCGG- -5'
24382 3' -52.3 NC_005264.1 + 123691 0.66 0.983142
Target:  5'- -aGCACGAuCAGggaauaccuGCGUCGgggcgaGUGGCGCCg -3'
miRNA:   3'- agUGUGCU-GUU---------UGCAGUg-----CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 107912 0.66 0.983142
Target:  5'- cCACuCG-CAGcCGuUCGCcaGCAGCGCCg -3'
miRNA:   3'- aGUGuGCuGUUuGC-AGUG--CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 156597 0.66 0.983142
Target:  5'- aC-CGCGACGGAggcggcaaGUCuCGCGGCgGCCg -3'
miRNA:   3'- aGuGUGCUGUUUg-------CAGuGCGUCG-CGG- -5'
24382 3' -52.3 NC_005264.1 + 43487 0.66 0.984999
Target:  5'- cUCGCuuGACAagAACcUCGggguCGCAGCGCUu -3'
miRNA:   3'- -AGUGugCUGU--UUGcAGU----GCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 19407 0.66 0.986696
Target:  5'- -gACAUGAUggGgGagGCGaGGCGCCg -3'
miRNA:   3'- agUGUGCUGuuUgCagUGCgUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 64130 0.66 0.983142
Target:  5'- gUCGC-CGAuCAGGC-UCGCcaCGGCGCCg -3'
miRNA:   3'- -AGUGuGCU-GUUUGcAGUGc-GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 11648 0.66 0.986696
Target:  5'- -aGCGCGGCAGGgcugcugucguCGUCGCGCAauuCGaCCg -3'
miRNA:   3'- agUGUGCUGUUU-----------GCAGUGCGUc--GC-GG- -5'
24382 3' -52.3 NC_005264.1 + 75085 0.66 0.984999
Target:  5'- uUCuuCGCGGCGcuGCGgcaggCGC-CGGCGCCg -3'
miRNA:   3'- -AGu-GUGCUGUu-UGCa----GUGcGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 123407 0.66 0.984459
Target:  5'- cCGCccCGGCAaaaccGAUGUCuccggcgcugagcaGCGCAGUGCCc -3'
miRNA:   3'- aGUGu-GCUGU-----UUGCAG--------------UGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 148054 0.66 0.982947
Target:  5'- aCACAuaaagcuuuucguUGGCGAAUG-CG-GCGGCGCCa -3'
miRNA:   3'- aGUGU-------------GCUGUUUGCaGUgCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 157070 0.66 0.985696
Target:  5'- -uGCACGACGGucGCGUgggucUcccagcuuuuuucuuGCGCGGCGUCa -3'
miRNA:   3'- agUGUGCUGUU--UGCA-----G---------------UGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 38524 0.66 0.983142
Target:  5'- --uCugGACAGGauuagCGCGCAGUGUCa -3'
miRNA:   3'- aguGugCUGUUUgca--GUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 92473 0.66 0.984821
Target:  5'- cUCACuuuUGACGGguacacuGCgGUgGCGguGCGCCu -3'
miRNA:   3'- -AGUGu--GCUGUU-------UG-CAgUGCguCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 17332 0.66 0.984999
Target:  5'- gUUGC-CGugG-ACGUC-UGCAGUGCCu -3'
miRNA:   3'- -AGUGuGCugUuUGCAGuGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 69791 0.66 0.984999
Target:  5'- cCGCAUGGC-AGCGcagcagCACGCauucGGCGCg -3'
miRNA:   3'- aGUGUGCUGuUUGCa-----GUGCG----UCGCGg -5'
24382 3' -52.3 NC_005264.1 + 144988 0.66 0.983142
Target:  5'- cUCACGCGGuCGAACa--GCGC-GCGCg -3'
miRNA:   3'- -AGUGUGCU-GUUUGcagUGCGuCGCGg -5'
24382 3' -52.3 NC_005264.1 + 54391 0.66 0.982751
Target:  5'- cCGCGCgGAUAAuaaagaagucguUGUUGCGCGGCGCg -3'
miRNA:   3'- aGUGUG-CUGUUu-----------GCAGUGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 141567 0.66 0.986533
Target:  5'- cCGCugGAgauGGCGUUAccaccucCGCGGCGCg -3'
miRNA:   3'- aGUGugCUgu-UUGCAGU-------GCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 31084 0.66 0.984999
Target:  5'- aUCGuCACGAUGucuuuUGUCGcCGUAGCGCa -3'
miRNA:   3'- -AGU-GUGCUGUuu---GCAGU-GCGUCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.