miRNA display CGI


Results 1 - 20 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 3' -52.3 NC_005264.1 + 122558 1.14 0.003758
Target:  5'- uUCACACGACAAACGUCACGCAGCGCCg -3'
miRNA:   3'- -AGUGUGCUGUUUGCAGUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 36961 0.88 0.159603
Target:  5'- cCGCACGACAGAgGUUGCGCgcuGGCGCCa -3'
miRNA:   3'- aGUGUGCUGUUUgCAGUGCG---UCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 155988 0.88 0.159603
Target:  5'- cCGCACGACAGAgGUUGCGCgcuGGCGCCa -3'
miRNA:   3'- aGUGUGCUGUUUgCAGUGCG---UCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 8839 0.88 0.163769
Target:  5'- -aACACGACAAACGUCGCG-AGCGUCg -3'
miRNA:   3'- agUGUGCUGUUUGCAGUGCgUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 127865 0.88 0.163769
Target:  5'- -aACACGACAAACGUCGCG-AGCGUCg -3'
miRNA:   3'- agUGUGCUGUUUGCAGUGCgUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 26117 0.87 0.181426
Target:  5'- cCGCGCGGCu--CGUgGCGCGGCGCCg -3'
miRNA:   3'- aGUGUGCUGuuuGCAgUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 125497 0.84 0.269657
Target:  5'- -gGCGCGGCGAACGUCGgGguGCGCg -3'
miRNA:   3'- agUGUGCUGUUUGCAGUgCguCGCGg -5'
24382 3' -52.3 NC_005264.1 + 6470 0.84 0.269657
Target:  5'- -gGCGCGGCGAACGUCGgGguGCGCg -3'
miRNA:   3'- agUGUGCUGUUUGCAGUgCguCGCGg -5'
24382 3' -52.3 NC_005264.1 + 56227 0.81 0.38937
Target:  5'- aUCACugG-CGAGCGUCGCGCGGCuuuuGUCg -3'
miRNA:   3'- -AGUGugCuGUUUGCAGUGCGUCG----CGG- -5'
24382 3' -52.3 NC_005264.1 + 98412 0.81 0.397919
Target:  5'- --cCGCGGCAGACGUCAucgccgugccCGCGGCGUCg -3'
miRNA:   3'- aguGUGCUGUUUGCAGU----------GCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 39562 0.8 0.412724
Target:  5'- cCGCGCGGCAAGcCGggacugaucuaccuUCGCGUGGCGCCg -3'
miRNA:   3'- aGUGUGCUGUUU-GC--------------AGUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 158589 0.8 0.412724
Target:  5'- cCGCGCGGCAAGcCGggacugaucuaccuUCGCGUGGCGCCg -3'
miRNA:   3'- aGUGUGCUGUUU-GC--------------AGUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 70637 0.8 0.414488
Target:  5'- uUCGCGCG-CAGgcGCGUCAacaacaccguggcCGCGGCGCCg -3'
miRNA:   3'- -AGUGUGCuGUU--UGCAGU-------------GCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 72685 0.8 0.424272
Target:  5'- cCugGCGGCGuuCGUgACGCGGCGCa -3'
miRNA:   3'- aGugUGCUGUuuGCAgUGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 25940 0.8 0.424272
Target:  5'- -uGCACGACGGGC-UCACGUAcGCGCCc -3'
miRNA:   3'- agUGUGCUGUUUGcAGUGCGU-CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 106122 0.79 0.47995
Target:  5'- -gGCACGACAGAgcaauggcagcuUGUCGCGCGGCgaGCCu -3'
miRNA:   3'- agUGUGCUGUUU------------GCAGUGCGUCG--CGG- -5'
24382 3' -52.3 NC_005264.1 + 115288 0.78 0.499296
Target:  5'- -aGCGCGACAacGACGUCccGCGCAGC-CCu -3'
miRNA:   3'- agUGUGCUGU--UUGCAG--UGCGUCGcGG- -5'
24382 3' -52.3 NC_005264.1 + 14380 0.78 0.499296
Target:  5'- cCGC-CGACGAAacgguuCGUCGCGCAGCGUg -3'
miRNA:   3'- aGUGuGCUGUUU------GCAGUGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 45393 0.78 0.538964
Target:  5'- -gGCGCGGCAAACGauggaGgGCGGCGCCc -3'
miRNA:   3'- agUGUGCUGUUUGCag---UgCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 50570 0.78 0.549054
Target:  5'- gCGCguGCGGgAAGCG-CACGCGGCGCUg -3'
miRNA:   3'- aGUG--UGCUgUUUGCaGUGCGUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.