miRNA display CGI


Results 1 - 20 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 3' -52.3 NC_005264.1 + 129 0.67 0.981117
Target:  5'- cCGCucccCGGCGgccgccuuAACGccggCGCGCAGCGCg -3'
miRNA:   3'- aGUGu---GCUGU--------UUGCa---GUGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 623 0.73 0.781884
Target:  5'- cCGC-CGGCccGCGUCGCagGCAGCGCg -3'
miRNA:   3'- aGUGuGCUGuuUGCAGUG--CGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 1177 0.71 0.874581
Target:  5'- gCGCGCGAUggGgG-UACGCAGCGgaCCg -3'
miRNA:   3'- aGUGUGCUGuuUgCaGUGCGUCGC--GG- -5'
24382 3' -52.3 NC_005264.1 + 1631 0.69 0.939597
Target:  5'- -gGCGCGGCuccaaccuGccaucucuuuccggGCGUUACGcCAGCGCCu -3'
miRNA:   3'- agUGUGCUGu-------U--------------UGCAGUGC-GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 2477 0.67 0.980905
Target:  5'- uUCGCGgcugcuuCGACGAugGUCG-GCGG-GCCu -3'
miRNA:   3'- -AGUGU-------GCUGUUugCAGUgCGUCgCGG- -5'
24382 3' -52.3 NC_005264.1 + 2565 0.67 0.97117
Target:  5'- -gGC-CGACAAGCGUCACaugagGguG-GCCg -3'
miRNA:   3'- agUGuGCUGUUUGCAGUG-----CguCgCGG- -5'
24382 3' -52.3 NC_005264.1 + 2832 0.68 0.957925
Target:  5'- gUugGCGGaGGGCcgGUCGCGCucGCGCCg -3'
miRNA:   3'- aGugUGCUgUUUG--CAGUGCGu-CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 3166 0.72 0.851593
Target:  5'- ---aACGGCGAcccuccGCGUCGCGaCGGCGCg -3'
miRNA:   3'- agugUGCUGUU------UGCAGUGC-GUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 3315 0.67 0.976528
Target:  5'- aUCGCGCGccguGCAAGCGgagCGagaGUAgucGCGCCa -3'
miRNA:   3'- -AGUGUGC----UGUUUGCa--GUg--CGU---CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 3635 0.73 0.781884
Target:  5'- gCGCGCuGACAuuCGUCGCGaUGGcCGCCg -3'
miRNA:   3'- aGUGUG-CUGUuuGCAGUGC-GUC-GCGG- -5'
24382 3' -52.3 NC_005264.1 + 4085 0.68 0.961567
Target:  5'- gUUGCACGGgcGGCGUCGCGgcacgaCGGgGCCg -3'
miRNA:   3'- -AGUGUGCUguUUGCAGUGC------GUCgCGG- -5'
24382 3' -52.3 NC_005264.1 + 4215 0.69 0.936194
Target:  5'- --cCACG-CAAGCuUCGCuagGCGGCGCCa -3'
miRNA:   3'- aguGUGCuGUUUGcAGUG---CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 4380 0.66 0.984459
Target:  5'- cCGCccCGGCAaaaccGAUGUCuccggcgcugagcaGCGCAGUGCCc -3'
miRNA:   3'- aGUGu-GCUGU-----UUGCAG--------------UGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 4664 0.66 0.983142
Target:  5'- -aGCACGAuCAGggaauaccuGCGUCGgggcgaGUGGCGCCg -3'
miRNA:   3'- agUGUGCU-GUU---------UGCAGUg-----CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 4755 0.72 0.851593
Target:  5'- cUCGCAUaGGCuGAUGUgcgccuucUGCGCGGCGCCg -3'
miRNA:   3'- -AGUGUG-CUGuUUGCA--------GUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 4818 0.69 0.94102
Target:  5'- cCACGCGAaacAAUG-CACGCGG-GCCu -3'
miRNA:   3'- aGUGUGCUgu-UUGCaGUGCGUCgCGG- -5'
24382 3' -52.3 NC_005264.1 + 4876 0.74 0.73356
Target:  5'- cUugGCGGCAAGCGaCACGCGGaguucgagGCCa -3'
miRNA:   3'- aGugUGCUGUUUGCaGUGCGUCg-------CGG- -5'
24382 3' -52.3 NC_005264.1 + 5418 0.71 0.888804
Target:  5'- gUACGCGGCAucugucucGGCGUCGcCGCucuCGCCg -3'
miRNA:   3'- aGUGUGCUGU--------UUGCAGU-GCGuc-GCGG- -5'
24382 3' -52.3 NC_005264.1 + 5547 0.67 0.980905
Target:  5'- gUC-CGgGACuGACGUCACcgacagcaccgcgGaCAGCGCCu -3'
miRNA:   3'- -AGuGUgCUGuUUGCAGUG-------------C-GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 5629 0.67 0.973949
Target:  5'- cCGCGCGACgcuAggUGUCcccacaGCGCGGCGgUa -3'
miRNA:   3'- aGUGUGCUG---UuuGCAG------UGCGUCGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.