miRNA display CGI


Results 1 - 20 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 3' -52.3 NC_005264.1 + 7350 0.75 0.703404
Target:  5'- uUCGCAcCGGCAAAa-UCugGCGGcCGCCg -3'
miRNA:   3'- -AGUGU-GCUGUUUgcAGugCGUC-GCGG- -5'
24382 3' -52.3 NC_005264.1 + 76247 0.77 0.589933
Target:  5'- -gGCGCGACGAccGCGugucUCACGCAGauCGCCa -3'
miRNA:   3'- agUGUGCUGUU--UGC----AGUGCGUC--GCGG- -5'
24382 3' -52.3 NC_005264.1 + 115944 0.76 0.620946
Target:  5'- aCACGCGGCGcaGGCuaggaggUACGCGGCGCCc -3'
miRNA:   3'- aGUGUGCUGU--UUGca-----GUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 66599 0.75 0.672694
Target:  5'- cUCGCugGGCu-GCGcCGCGUugccGGCGCCg -3'
miRNA:   3'- -AGUGugCUGuuUGCaGUGCG----UCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 159206 0.75 0.682977
Target:  5'- cCAuCGCGACGAAUGUCA-GC-GCGCCc -3'
miRNA:   3'- aGU-GUGCUGUUUGCAGUgCGuCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 157205 0.75 0.682977
Target:  5'- cCGCGCugugggGACAccuAGCGUCGCGCGGC-CCg -3'
miRNA:   3'- aGUGUG------CUGU---UUGCAGUGCGUCGcGG- -5'
24382 3' -52.3 NC_005264.1 + 131020 0.75 0.693217
Target:  5'- -gGCACGGCAGaguacGCGUCACgaccugcgGCGGCGaCCg -3'
miRNA:   3'- agUGUGCUGUU-----UGCAGUG--------CGUCGC-GG- -5'
24382 3' -52.3 NC_005264.1 + 32915 0.75 0.693217
Target:  5'- cUCGauCGCG-CAGGgGUCGCGgGGCGCCg -3'
miRNA:   3'- -AGU--GUGCuGUUUgCAGUGCgUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 87745 0.75 0.693217
Target:  5'- -aGCGCGACu-GCGUCAaGUAGCGCa -3'
miRNA:   3'- agUGUGCUGuuUGCAGUgCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 56397 0.77 0.569403
Target:  5'- -gGCGCGACGAuCGcauaucgaGCGCGGCGCCg -3'
miRNA:   3'- agUGUGCUGUUuGCag------UGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 48354 0.77 0.569403
Target:  5'- aCGcCAUGGCGGccuCGUUGCGCAGUGCCg -3'
miRNA:   3'- aGU-GUGCUGUUu--GCAGUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 50570 0.78 0.549054
Target:  5'- gCGCguGCGGgAAGCG-CACGCGGCGCUg -3'
miRNA:   3'- aGUG--UGCUgUUUGCaGUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 127865 0.88 0.163769
Target:  5'- -aACACGACAAACGUCGCG-AGCGUCg -3'
miRNA:   3'- agUGUGCUGUUUGCAGUGCgUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 26117 0.87 0.181426
Target:  5'- cCGCGCGGCu--CGUgGCGCGGCGCCg -3'
miRNA:   3'- aGUGUGCUGuuuGCAgUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 125497 0.84 0.269657
Target:  5'- -gGCGCGGCGAACGUCGgGguGCGCg -3'
miRNA:   3'- agUGUGCUGUUUGCAGUgCguCGCGg -5'
24382 3' -52.3 NC_005264.1 + 56227 0.81 0.38937
Target:  5'- aUCACugG-CGAGCGUCGCGCGGCuuuuGUCg -3'
miRNA:   3'- -AGUGugCuGUUUGCAGUGCGUCG----CGG- -5'
24382 3' -52.3 NC_005264.1 + 158589 0.8 0.412724
Target:  5'- cCGCGCGGCAAGcCGggacugaucuaccuUCGCGUGGCGCCg -3'
miRNA:   3'- aGUGUGCUGUUU-GC--------------AGUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 70637 0.8 0.414488
Target:  5'- uUCGCGCG-CAGgcGCGUCAacaacaccguggcCGCGGCGCCg -3'
miRNA:   3'- -AGUGUGCuGUU--UGCAGU-------------GCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 72685 0.8 0.424272
Target:  5'- cCugGCGGCGuuCGUgACGCGGCGCa -3'
miRNA:   3'- aGugUGCUGUuuGCAgUGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 106122 0.79 0.47995
Target:  5'- -gGCACGACAGAgcaauggcagcuUGUCGCGCGGCgaGCCu -3'
miRNA:   3'- agUGUGCUGUUU------------GCAGUGCGUCG--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.