miRNA display CGI


Results 21 - 40 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 3' -52.3 NC_005264.1 + 5698 0.67 0.97117
Target:  5'- gCGCGCGGgcAACGcCugGCGGCGg- -3'
miRNA:   3'- aGUGUGCUguUUGCaGugCGUCGCgg -5'
24382 3' -52.3 NC_005264.1 + 5777 0.68 0.954053
Target:  5'- cCACGCGAC---CGUCGUGCAccaccgagGCGCCc -3'
miRNA:   3'- aGUGUGCUGuuuGCAGUGCGU--------CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 6311 0.71 0.888804
Target:  5'- cUUGCGCGGCGAgGCuUCGCGUGGCGUa -3'
miRNA:   3'- -AGUGUGCUGUU-UGcAGUGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 6470 0.84 0.269657
Target:  5'- -gGCGCGGCGAACGUCGgGguGCGCg -3'
miRNA:   3'- agUGUGCUGUUUGCAGUgCguCGCGg -5'
24382 3' -52.3 NC_005264.1 + 6671 0.67 0.97117
Target:  5'- cCACGCcGCAAA-GcCGCGCAuauGCGCCc -3'
miRNA:   3'- aGUGUGcUGUUUgCaGUGCGU---CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 6750 0.73 0.761939
Target:  5'- -gGCGCGGgAAGUGuucaucgauguauUCGCGCAGCGCCg -3'
miRNA:   3'- agUGUGCUgUUUGC-------------AGUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 7049 0.71 0.888804
Target:  5'- -uGCGCG-CAAGCG--GCGaCGGCGCCg -3'
miRNA:   3'- agUGUGCuGUUUGCagUGC-GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 7350 0.75 0.703404
Target:  5'- uUCGCAcCGGCAAAa-UCugGCGGcCGCCg -3'
miRNA:   3'- -AGUGU-GCUGUUUgcAGugCGUC-GCGG- -5'
24382 3' -52.3 NC_005264.1 + 7930 0.71 0.888804
Target:  5'- gCGCGCGucCAcGCGUCGuccacggcCGCGGCGUCu -3'
miRNA:   3'- aGUGUGCu-GUuUGCAGU--------GCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 8010 0.68 0.957925
Target:  5'- -gGC-CGGCAGAggcgccCGcCACGaCGGCGCCa -3'
miRNA:   3'- agUGuGCUGUUU------GCaGUGC-GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 8777 0.68 0.952846
Target:  5'- gCGaACGGCGGGCGUCggccaggacggccaGCGCuccucuucgAGCGCCg -3'
miRNA:   3'- aGUgUGCUGUUUGCAG--------------UGCG---------UCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 8839 0.88 0.163769
Target:  5'- -aACACGACAAACGUCGCG-AGCGUCg -3'
miRNA:   3'- agUGUGCUGUUUGCAGUGCgUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 9383 0.72 0.82677
Target:  5'- -aGCGCGAUuauGAgGUCcucgUGCAGCGCCa -3'
miRNA:   3'- agUGUGCUGu--UUgCAGu---GCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 9487 0.73 0.772457
Target:  5'- cUCGCgucaGCGAguCAGccaGCGUCagGCGCGGCGCCc -3'
miRNA:   3'- -AGUG----UGCU--GUU---UGCAG--UGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 9905 0.67 0.973949
Target:  5'- cCugGCGGCAGAa---AgGCGGCGCUa -3'
miRNA:   3'- aGugUGCUGUUUgcagUgCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 10536 0.73 0.809302
Target:  5'- gUCGCGCGACGAACugaagaaacUUGCGCAGgCGCg -3'
miRNA:   3'- -AGUGUGCUGUUUGc--------AGUGCGUC-GCGg -5'
24382 3' -52.3 NC_005264.1 + 11648 0.66 0.986696
Target:  5'- -aGCGCGGCAGGgcugcugucguCGUCGCGCAauuCGaCCg -3'
miRNA:   3'- agUGUGCUGUUU-----------GCAGUGCGUc--GC-GG- -5'
24382 3' -52.3 NC_005264.1 + 11743 0.69 0.945604
Target:  5'- ---gGCGACAAACaUCACGUcgucuGGCGCg -3'
miRNA:   3'- agugUGCUGUUUGcAGUGCG-----UCGCGg -5'
24382 3' -52.3 NC_005264.1 + 11993 0.75 0.693217
Target:  5'- -gGCACGGCAGaguacGCGUCACgaccugcgGCGGCGaCCg -3'
miRNA:   3'- agUGUGCUGUU-----UGCAGUG--------CGUCGC-GG- -5'
24382 3' -52.3 NC_005264.1 + 13423 0.74 0.743444
Target:  5'- gCGCGCGACcgccgccgccgAGACGcgaCGCgGCGGCGCCg -3'
miRNA:   3'- aGUGUGCUG-----------UUUGCa--GUG-CGUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.