miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24384 3' -59.5 NC_005264.1 + 42731 0.69 0.582377
Target:  5'- cGAGaGGUUCUCCCcGCCCaCCuuggauGGACACg -3'
miRNA:   3'- -CUCgCCAAGGGGGuCGGG-GG------UUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 47205 0.66 0.778729
Target:  5'- uGAGCGGggCCa-CGGCCgUCGAugGCu -3'
miRNA:   3'- -CUCGCCaaGGggGUCGGgGGUUugUG- -5'
24384 3' -59.5 NC_005264.1 + 52696 0.72 0.405168
Target:  5'- cGGCGGguuucgCCgCCC-GCCCCCAAaaGCGCg -3'
miRNA:   3'- cUCGCCaa----GG-GGGuCGGGGGUU--UGUG- -5'
24384 3' -59.5 NC_005264.1 + 65414 0.68 0.652604
Target:  5'- cGGCGGcgCCCgCAGCgCUcacugCCGAACACa -3'
miRNA:   3'- cUCGCCaaGGGgGUCG-GG-----GGUUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 69872 0.67 0.692548
Target:  5'- -cGUGGUgaUCCCCUGGCauuCCUGAACAUg -3'
miRNA:   3'- cuCGCCA--AGGGGGUCGg--GGGUUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 70879 0.66 0.778729
Target:  5'- gGAGU--UUCCCUCGGCCCCUGGuCAUc -3'
miRNA:   3'- -CUCGccAAGGGGGUCGGGGGUUuGUG- -5'
24384 3' -59.5 NC_005264.1 + 76185 0.68 0.622451
Target:  5'- gGAGCuaGGgugUCCCCCgcGGCgCCCAA-CGCa -3'
miRNA:   3'- -CUCG--CCa--AGGGGG--UCGgGGGUUuGUG- -5'
24384 3' -59.5 NC_005264.1 + 88879 0.66 0.731713
Target:  5'- cGAGCGacUUCUUCAGCCCCCuGGGCAa -3'
miRNA:   3'- -CUCGCcaAGGGGGUCGGGGG-UUUGUg -5'
24384 3' -59.5 NC_005264.1 + 91400 0.69 0.56252
Target:  5'- aGAGUGGUUggCCCUAGCgCCgGGGCACc -3'
miRNA:   3'- -CUCGCCAAg-GGGGUCGgGGgUUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 95800 0.66 0.76862
Target:  5'- uGGGCGGUgagccuaUCCUgaGGCCCUCgAAGCAUg -3'
miRNA:   3'- -CUCGCCA-------AGGGggUCGGGGG-UUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 96346 0.68 0.662634
Target:  5'- cGAGCGcg-CCgCgCAGCCCgCCAAGCAUu -3'
miRNA:   3'- -CUCGCcaaGGgG-GUCGGG-GGUUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 97372 0.73 0.380338
Target:  5'- cAGCGGcguaUCCCCCaaaAGCCCCCAGGg-- -3'
miRNA:   3'- cUCGCCa---AGGGGG---UCGGGGGUUUgug -5'
24384 3' -59.5 NC_005264.1 + 97974 0.71 0.439817
Target:  5'- -uGCGGgcaaUCUCCCAGCCgCCGGACu- -3'
miRNA:   3'- cuCGCCa---AGGGGGUCGGgGGUUUGug -5'
24384 3' -59.5 NC_005264.1 + 104113 0.67 0.701448
Target:  5'- uGGGCGacgUCCCCCugguGGCCgCCCGccuaguaAACGCg -3'
miRNA:   3'- -CUCGCca-AGGGGG----UCGG-GGGU-------UUGUG- -5'
24384 3' -59.5 NC_005264.1 + 104930 0.78 0.167951
Target:  5'- cGGCGGaaCCCCCAGCCgugCCAAGCGCc -3'
miRNA:   3'- cUCGCCaaGGGGGUCGGg--GGUUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 107661 0.66 0.769545
Target:  5'- -cGCGGUcgccgCCUUCAGCCgcgCCCAGAgGCc -3'
miRNA:   3'- cuCGCCAa----GGGGGUCGG---GGGUUUgUG- -5'
24384 3' -59.5 NC_005264.1 + 112616 0.7 0.523413
Target:  5'- gGAGCGGggCCCgCCGGUCacgcaaCgCAGACGCg -3'
miRNA:   3'- -CUCGCCaaGGG-GGUCGGg-----G-GUUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 115246 0.66 0.769545
Target:  5'- -cGCGaGUcUCCCCCAacgcGUCCCCGcgagccauaucuGGCACg -3'
miRNA:   3'- cuCGC-CA-AGGGGGU----CGGGGGU------------UUGUG- -5'
24384 3' -59.5 NC_005264.1 + 116580 0.73 0.364359
Target:  5'- cGGCGa--CCCCUAaacGCCCCCAGGCGCg -3'
miRNA:   3'- cUCGCcaaGGGGGU---CGGGGGUUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 117920 0.68 0.626472
Target:  5'- -cGCGGUUCgcuugcgccggaucuCUCCucccGCCCCCAGACGa -3'
miRNA:   3'- cuCGCCAAG---------------GGGGu---CGGGGGUUUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.