miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24384 3' -59.5 NC_005264.1 + 1950 0.67 0.681618
Target:  5'- -cGCGGccguugCCCCCccccccgAGCUCCCAuauGCACu -3'
miRNA:   3'- cuCGCCaa----GGGGG-------UCGGGGGUu--UGUG- -5'
24384 3' -59.5 NC_005264.1 + 3746 0.7 0.49478
Target:  5'- gGAGCGGggCCUCUuGCCgCCgGGGCGCu -3'
miRNA:   3'- -CUCGCCaaGGGGGuCGG-GGgUUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 3995 0.66 0.778729
Target:  5'- aGGGCGGcacaugCCUCCucGCCCaCCAGGgGCu -3'
miRNA:   3'- -CUCGCCaa----GGGGGu-CGGG-GGUUUgUG- -5'
24384 3' -59.5 NC_005264.1 + 9404 0.66 0.769545
Target:  5'- -cGCaGGcaaUCCCCC-GCCCCCAuuAGCGa -3'
miRNA:   3'- cuCG-CCa--AGGGGGuCGGGGGU--UUGUg -5'
24384 3' -59.5 NC_005264.1 + 9516 0.68 0.652604
Target:  5'- -cGCGGcgCCCUCgaggGGCCCUCGAACu- -3'
miRNA:   3'- cuCGCCaaGGGGG----UCGGGGGUUUGug -5'
24384 3' -59.5 NC_005264.1 + 10522 0.66 0.769545
Target:  5'- cGAGCGGgUCCUgugcggcgCC-GCCCUCAGggGCGCg -3'
miRNA:   3'- -CUCGCCaAGGG--------GGuCGGGGGUU--UGUG- -5'
24384 3' -59.5 NC_005264.1 + 12643 0.66 0.731713
Target:  5'- -cGCucg-CCCuCCGGCCCCCGucACACg -3'
miRNA:   3'- cuCGccaaGGG-GGUCGGGGGUu-UGUG- -5'
24384 3' -59.5 NC_005264.1 + 13368 0.66 0.750831
Target:  5'- cGAGcCGGggCCCgCGGCuCCCCcGAgACc -3'
miRNA:   3'- -CUC-GCCaaGGGgGUCG-GGGGuUUgUG- -5'
24384 3' -59.5 NC_005264.1 + 18568 0.67 0.712262
Target:  5'- gGAGCGGcaUCCgCCGGCCCa-AGGCAg -3'
miRNA:   3'- -CUCGCCa-AGGgGGUCGGGggUUUGUg -5'
24384 3' -59.5 NC_005264.1 + 19248 0.66 0.778729
Target:  5'- -cGCGccauucucGUUCCCuCCGGgCCCCGGGgACg -3'
miRNA:   3'- cuCGC--------CAAGGG-GGUCgGGGGUUUgUG- -5'
24384 3' -59.5 NC_005264.1 + 19742 0.68 0.642558
Target:  5'- ---aGGUUCgCCguGCCCCCAGcaucGCGCc -3'
miRNA:   3'- cucgCCAAGgGGguCGGGGGUU----UGUG- -5'
24384 3' -59.5 NC_005264.1 + 25310 0.66 0.735565
Target:  5'- aAGCGGUcuUCCucgaagucgucguagUugCCGGCCCCCAGAgACu -3'
miRNA:   3'- cUCGCCA--AGG---------------G--GGUCGGGGGUUUgUG- -5'
24384 3' -59.5 NC_005264.1 + 26816 0.66 0.750831
Target:  5'- aAGUGGgccgcgCCgCUCuugAGCCCCCAGACAa -3'
miRNA:   3'- cUCGCCaa----GG-GGG---UCGGGGGUUUGUg -5'
24384 3' -59.5 NC_005264.1 + 27306 0.76 0.230725
Target:  5'- -cGCGG-UCCCUaGGUCCCCGAGCACu -3'
miRNA:   3'- cuCGCCaAGGGGgUCGGGGGUUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 28826 0.67 0.721052
Target:  5'- gGAGCguauaucGGUUUgCCCGGCCCCUguaGAACu- -3'
miRNA:   3'- -CUCG-------CCAAGgGGGUCGGGGG---UUUGug -5'
24384 3' -59.5 NC_005264.1 + 29171 0.69 0.602371
Target:  5'- cGAGCaggcGUUCCUCUAGCuCCCCAgGugGCg -3'
miRNA:   3'- -CUCGc---CAAGGGGGUCG-GGGGU-UugUG- -5'
24384 3' -59.5 NC_005264.1 + 30340 0.67 0.671641
Target:  5'- cGAGCuG-UCCCCCgAGUCCCCGcaggagccccuucGGCGCc -3'
miRNA:   3'- -CUCGcCaAGGGGG-UCGGGGGU-------------UUGUG- -5'
24384 3' -59.5 NC_005264.1 + 34900 0.69 0.59236
Target:  5'- gGAGCGGgcgauuguucCCCCCAGCCUCUGuuCGu -3'
miRNA:   3'- -CUCGCCaa--------GGGGGUCGGGGGUuuGUg -5'
24384 3' -59.5 NC_005264.1 + 35807 0.72 0.413669
Target:  5'- uGGCGGgcgccUCUgCCGGCCCCgCAAugGCg -3'
miRNA:   3'- cUCGCCa----AGGgGGUCGGGG-GUUugUG- -5'
24384 3' -59.5 NC_005264.1 + 40313 0.66 0.750831
Target:  5'- cGGCGaGgaUCCCCuGCCCCCcgcCGCg -3'
miRNA:   3'- cUCGC-CaaGGGGGuCGGGGGuuuGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.