miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24384 3' -59.5 NC_005264.1 + 121273 1.1 0.00117
Target:  5'- cGAGCGGUUCCCCCAGCCCCCAAACACg -3'
miRNA:   3'- -CUCGCCAAGGGGGUCGGGGGUUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 104930 0.78 0.167951
Target:  5'- cGGCGGaaCCCCCAGCCgugCCAAGCGCc -3'
miRNA:   3'- cUCGCCaaGGGGGUCGGg--GGUUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 27306 0.76 0.230725
Target:  5'- -cGCGG-UCCCUaGGUCCCCGAGCACu -3'
miRNA:   3'- cuCGCCaAGGGGgUCGGGGGUUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 116580 0.73 0.364359
Target:  5'- cGGCGa--CCCCUAaacGCCCCCAGGCGCg -3'
miRNA:   3'- cUCGCcaaGGGGGU---CGGGGGUUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 97372 0.73 0.380338
Target:  5'- cAGCGGcguaUCCCCCaaaAGCCCCCAGGg-- -3'
miRNA:   3'- cUCGCCa---AGGGGG---UCGGGGGUUUgug -5'
24384 3' -59.5 NC_005264.1 + 52696 0.72 0.405168
Target:  5'- cGGCGGguuucgCCgCCC-GCCCCCAAaaGCGCg -3'
miRNA:   3'- cUCGCCaa----GG-GGGuCGGGGGUU--UGUG- -5'
24384 3' -59.5 NC_005264.1 + 35807 0.72 0.413669
Target:  5'- uGGCGGgcgccUCUgCCGGCCCCgCAAugGCg -3'
miRNA:   3'- cUCGCCa----AGGgGGUCGGGG-GUUugUG- -5'
24384 3' -59.5 NC_005264.1 + 154833 0.72 0.413669
Target:  5'- uGGCGGgcgccUCUgCCGGCCCCgCAAugGCg -3'
miRNA:   3'- cUCGCCa----AGGgGGUCGGGG-GUUugUG- -5'
24384 3' -59.5 NC_005264.1 + 97974 0.71 0.439817
Target:  5'- -uGCGGgcaaUCUCCCAGCCgCCGGACu- -3'
miRNA:   3'- cuCGCCa---AGGGGGUCGGgGGUUUGug -5'
24384 3' -59.5 NC_005264.1 + 122772 0.7 0.49478
Target:  5'- gGAGCGGggCCUCUuGCCgCCgGGGCGCu -3'
miRNA:   3'- -CUCGCCaaGGGGGuCGG-GGgUUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 3746 0.7 0.49478
Target:  5'- gGAGCGGggCCUCUuGCCgCCgGGGCGCu -3'
miRNA:   3'- -CUCGCCaaGGGGGuCGG-GGgUUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 112616 0.7 0.523413
Target:  5'- gGAGCGGggCCCgCCGGUCacgcaaCgCAGACGCg -3'
miRNA:   3'- -CUCGCCaaGGG-GGUCGGg-----G-GUUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 139761 0.7 0.540896
Target:  5'- -cGCGGgacaugccggcgUCUCCCGGUaCCCCAAGCAa -3'
miRNA:   3'- cuCGCCa-----------AGGGGGUCG-GGGGUUUGUg -5'
24384 3' -59.5 NC_005264.1 + 91400 0.69 0.56252
Target:  5'- aGAGUGGUUggCCCUAGCgCCgGGGCACc -3'
miRNA:   3'- -CUCGCCAAg-GGGGUCGgGGgUUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 161757 0.69 0.582377
Target:  5'- cGAGaGGUUCUCCCcGCCCaCCuuggauGGACACg -3'
miRNA:   3'- -CUCgCCAAGGGGGuCGGG-GG------UUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 42731 0.69 0.582377
Target:  5'- cGAGaGGUUCUCCCcGCCCaCCuuggauGGACACg -3'
miRNA:   3'- -CUCgCCAAGGGGGuCGGG-GG------UUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 34900 0.69 0.59236
Target:  5'- gGAGCGGgcgauuguucCCCCCAGCCUCUGuuCGu -3'
miRNA:   3'- -CUCGCCaa--------GGGGGUCGGGGGUuuGUg -5'
24384 3' -59.5 NC_005264.1 + 129918 0.69 0.602371
Target:  5'- -cGCGGcgCCCCCGcGaCCCCU--GCGCg -3'
miRNA:   3'- cuCGCCaaGGGGGU-C-GGGGGuuUGUG- -5'
24384 3' -59.5 NC_005264.1 + 29171 0.69 0.602371
Target:  5'- cGAGCaggcGUUCCUCUAGCuCCCCAgGugGCg -3'
miRNA:   3'- -CUCGc---CAAGGGGGUCG-GGGGU-UugUG- -5'
24384 3' -59.5 NC_005264.1 + 133548 0.68 0.61843
Target:  5'- cGGGCGGcgugagguaCCGGCUCCCGGACACc -3'
miRNA:   3'- -CUCGCCaaggg----GGUCGGGGGUUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.