miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24384 3' -59.5 NC_005264.1 + 28826 0.67 0.721052
Target:  5'- gGAGCguauaucGGUUUgCCCGGCCCCUguaGAACu- -3'
miRNA:   3'- -CUCG-------CCAAGgGGGUCGGGGG---UUUGug -5'
24384 3' -59.5 NC_005264.1 + 149367 0.67 0.671641
Target:  5'- cGAGCuG-UCCCCCgAGUCCCCGcaggagccccuucGGCGCc -3'
miRNA:   3'- -CUCGcCaAGGGGG-UCGGGGGU-------------UUGUG- -5'
24384 3' -59.5 NC_005264.1 + 133000 0.67 0.67264
Target:  5'- -cGCGGUucUCUCCCAcuuuGCCCCUAcuccgguuccAGCGCc -3'
miRNA:   3'- cuCGCCA--AGGGGGU----CGGGGGU----------UUGUG- -5'
24384 3' -59.5 NC_005264.1 + 137151 0.67 0.673639
Target:  5'- uGGCGGggcaugcgcgucccgUCCCUUcugcuGCCCCCAGACGu -3'
miRNA:   3'- cUCGCCa--------------AGGGGGu----CGGGGGUUUGUg -5'
24384 3' -59.5 NC_005264.1 + 120976 0.67 0.681618
Target:  5'- -cGCGGccguugCCCCCccccccgAGCUCCCAuauGCACu -3'
miRNA:   3'- cuCGCCaa----GGGGG-------UCGGGGGUu--UGUG- -5'
24384 3' -59.5 NC_005264.1 + 153926 0.67 0.682614
Target:  5'- gGAGCGGgcgauuguucCCCCCAGCCUCUg----- -3'
miRNA:   3'- -CUCGCCaa--------GGGGGUCGGGGGuuugug -5'
24384 3' -59.5 NC_005264.1 + 142307 0.67 0.692548
Target:  5'- -cGCGcUUCUUCguGCCCgCCGGACACa -3'
miRNA:   3'- cuCGCcAAGGGGguCGGG-GGUUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 104113 0.67 0.701448
Target:  5'- uGGGCGacgUCCCCCugguGGCCgCCCGccuaguaAACGCg -3'
miRNA:   3'- -CUCGCca-AGGGGG----UCGG-GGGU-------UUGUG- -5'
24384 3' -59.5 NC_005264.1 + 18568 0.67 0.712262
Target:  5'- gGAGCGGcaUCCgCCGGCCCa-AGGCAg -3'
miRNA:   3'- -CUCGCCa-AGGgGGUCGGGggUUUGUg -5'
24384 3' -59.5 NC_005264.1 + 96346 0.68 0.662634
Target:  5'- cGAGCGcg-CCgCgCAGCCCgCCAAGCAUu -3'
miRNA:   3'- -CUCGCcaaGGgG-GUCGGG-GGUUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 128543 0.68 0.652604
Target:  5'- -cGCGGcgCCCUCgaggGGCCCUCGAACu- -3'
miRNA:   3'- cuCGCCaaGGGGG----UCGGGGGUUUGug -5'
24384 3' -59.5 NC_005264.1 + 19742 0.68 0.642558
Target:  5'- ---aGGUUCgCCguGCCCCCAGcaucGCGCc -3'
miRNA:   3'- cucgCCAAGgGGguCGGGGGUU----UGUG- -5'
24384 3' -59.5 NC_005264.1 + 97372 0.73 0.380338
Target:  5'- cAGCGGcguaUCCCCCaaaAGCCCCCAGGg-- -3'
miRNA:   3'- cUCGCCa---AGGGGG---UCGGGGGUUUgug -5'
24384 3' -59.5 NC_005264.1 + 52696 0.72 0.405168
Target:  5'- cGGCGGguuucgCCgCCC-GCCCCCAAaaGCGCg -3'
miRNA:   3'- cUCGCCaa----GG-GGGuCGGGGGUU--UGUG- -5'
24384 3' -59.5 NC_005264.1 + 154833 0.72 0.413669
Target:  5'- uGGCGGgcgccUCUgCCGGCCCCgCAAugGCg -3'
miRNA:   3'- cUCGCCa----AGGgGGUCGGGG-GUUugUG- -5'
24384 3' -59.5 NC_005264.1 + 122772 0.7 0.49478
Target:  5'- gGAGCGGggCCUCUuGCCgCCgGGGCGCu -3'
miRNA:   3'- -CUCGCCaaGGGGGuCGG-GGgUUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 112616 0.7 0.523413
Target:  5'- gGAGCGGggCCCgCCGGUCacgcaaCgCAGACGCg -3'
miRNA:   3'- -CUCGCCaaGGG-GGUCGGg-----G-GUUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 161757 0.69 0.582377
Target:  5'- cGAGaGGUUCUCCCcGCCCaCCuuggauGGACACg -3'
miRNA:   3'- -CUCgCCAAGGGGGuCGGG-GG------UUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 76185 0.68 0.622451
Target:  5'- gGAGCuaGGgugUCCCCCgcGGCgCCCAA-CGCa -3'
miRNA:   3'- -CUCG--CCa--AGGGGG--UCGgGGGUUuGUG- -5'
24384 3' -59.5 NC_005264.1 + 117920 0.68 0.626472
Target:  5'- -cGCGGUUCgcuugcgccggaucuCUCCucccGCCCCCAGACGa -3'
miRNA:   3'- cuCGCCAAG---------------GGGGu---CGGGGGUUUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.