miRNA display CGI


Results 21 - 40 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24385 3' -57.9 NC_005264.1 + 33254 0.72 0.474237
Target:  5'- ----cGCCGCAGCGCCugcaGAGCGCGcAAGa -3'
miRNA:   3'- gcucaCGGCGUCGCGG----CUUGCGC-UUU- -5'
24385 3' -57.9 NC_005264.1 + 34638 0.66 0.814721
Target:  5'- gGGGUGuUCGCGGCcaCCGGuCGCGAGGu -3'
miRNA:   3'- gCUCAC-GGCGUCGc-GGCUuGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 35481 0.75 0.361991
Target:  5'- aGAGUGCCGCG--GCCGAuCGCGAc- -3'
miRNA:   3'- gCUCACGGCGUcgCGGCUuGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 35585 0.68 0.712121
Target:  5'- gGAGcUGCUGCGGCuucgGCCGAugGCc--- -3'
miRNA:   3'- gCUC-ACGGCGUCG----CGGCUugCGcuuu -5'
24385 3' -57.9 NC_005264.1 + 35787 0.66 0.823242
Target:  5'- aGGGcGCgGUGGCGCCGucGugGCGGGc -3'
miRNA:   3'- gCUCaCGgCGUCGCGGC--UugCGCUUu -5'
24385 3' -57.9 NC_005264.1 + 36342 0.68 0.712121
Target:  5'- gGAG-GCCGCAcGaCGuucuCCGGACGCGGAGc -3'
miRNA:   3'- gCUCaCGGCGU-C-GC----GGCUUGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 38589 0.66 0.838957
Target:  5'- cCGAG-GCCGCGgaagaagagcuucGCcucGCCGcGGCGCGAGAc -3'
miRNA:   3'- -GCUCaCGGCGU-------------CG---CGGC-UUGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 39219 0.68 0.731723
Target:  5'- ----cGCCGCGGCGCUG-GCGgGGAGg -3'
miRNA:   3'- gcucaCGGCGUCGCGGCuUGCgCUUU- -5'
24385 3' -57.9 NC_005264.1 + 40786 0.68 0.731723
Target:  5'- -----uCCGCGGCGCCGAGaGCGGAGc -3'
miRNA:   3'- gcucacGGCGUCGCGGCUUgCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 40961 0.68 0.750987
Target:  5'- ----aGCCGCAGCgggcgacgGCgCGAGCGCGAc- -3'
miRNA:   3'- gcucaCGGCGUCG--------CG-GCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 43720 0.69 0.692251
Target:  5'- uCGAGcgGcCCGCGuGCGCCGAuaagUGCGAGGu -3'
miRNA:   3'- -GCUCa-C-GGCGU-CGCGGCUu---GCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 43856 0.66 0.814721
Target:  5'- gGGGcUGCCGCGGgGaagagacggaaCGAGCGCGGc- -3'
miRNA:   3'- gCUC-ACGGCGUCgCg----------GCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 51950 0.7 0.631735
Target:  5'- aGGGUGCCGCuaacGCGUCGugucGGCGCGc-- -3'
miRNA:   3'- gCUCACGGCGu---CGCGGC----UUGCGCuuu -5'
24385 3' -57.9 NC_005264.1 + 52201 0.69 0.672185
Target:  5'- uGAGgGCCGUggGGCGCgGuGGCGCGAGc -3'
miRNA:   3'- gCUCaCGGCG--UCGCGgC-UUGCGCUUu -5'
24385 3' -57.9 NC_005264.1 + 55608 0.68 0.741402
Target:  5'- uGGGaaaGCCGCggcuGGCGCCGAAUGCc--- -3'
miRNA:   3'- gCUCa--CGGCG----UCGCGGCUUGCGcuuu -5'
24385 3' -57.9 NC_005264.1 + 57367 0.67 0.782758
Target:  5'- uGGGUGCCGUguuaaccuucgguggGGCgcaGCCGAuuCGCGAu- -3'
miRNA:   3'- gCUCACGGCG---------------UCG---CGGCUu-GCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 58879 0.69 0.672185
Target:  5'- aGGGUG-CGCAGCGCC--ACGCGu-- -3'
miRNA:   3'- gCUCACgGCGUCGCGGcuUGCGCuuu -5'
24385 3' -57.9 NC_005264.1 + 59908 0.66 0.814721
Target:  5'- -cAGUGCCcuGUGGCGCaGAACGUGAc- -3'
miRNA:   3'- gcUCACGG--CGUCGCGgCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 60598 0.69 0.672185
Target:  5'- uCGAGccccuucucguaUGCCGCGGCaGCCGGcucGCGCaGGAGc -3'
miRNA:   3'- -GCUC------------ACGGCGUCG-CGGCU---UGCG-CUUU- -5'
24385 3' -57.9 NC_005264.1 + 64624 0.7 0.61148
Target:  5'- -cGGUGCUguccaGCAGCGCCGGAuucUGCGAu- -3'
miRNA:   3'- gcUCACGG-----CGUCGCGGCUU---GCGCUuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.