miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24385 3' -57.9 NC_005264.1 + 250 0.78 0.222767
Target:  5'- --uGUGCgGCGGCGCUGGACGCGGc- -3'
miRNA:   3'- gcuCACGgCGUCGCGGCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 2926 0.67 0.806037
Target:  5'- gGAGUcGCCG-AGCGagaCGGACGgGAAGa -3'
miRNA:   3'- gCUCA-CGGCgUCGCg--GCUUGCgCUUU- -5'
24385 3' -57.9 NC_005264.1 + 3273 0.67 0.769842
Target:  5'- ----aGCCGCAGCGCCacgucccuGGGCGaCGggGa -3'
miRNA:   3'- gcucaCGGCGUCGCGG--------CUUGC-GCuuU- -5'
24385 3' -57.9 NC_005264.1 + 5526 0.72 0.493036
Target:  5'- uGAcaGCCGCGGCGUCucGCGCGGAGc -3'
miRNA:   3'- gCUcaCGGCGUCGCGGcuUGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 8357 0.7 0.631735
Target:  5'- gCGAccGUCGCugaugcuuaccGGCGCCGGACGCGGc- -3'
miRNA:   3'- -GCUcaCGGCG-----------UCGCGGCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 10525 0.67 0.788215
Target:  5'- gCGGGU-CCuguGCGGCGCCGcccucaggGGCGCGGAu -3'
miRNA:   3'- -GCUCAcGG---CGUCGCGGC--------UUGCGCUUu -5'
24385 3' -57.9 NC_005264.1 + 11093 0.66 0.814721
Target:  5'- aCGA-UGCUGCGGCGUCGAGaGaCGAAu -3'
miRNA:   3'- -GCUcACGGCGUCGCGGCUUgC-GCUUu -5'
24385 3' -57.9 NC_005264.1 + 12963 0.66 0.814721
Target:  5'- cCGGGcgGCgCGCGcCGCCGAcgacgACGCGAGc -3'
miRNA:   3'- -GCUCa-CG-GCGUcGCGGCU-----UGCGCUUu -5'
24385 3' -57.9 NC_005264.1 + 13440 0.68 0.72196
Target:  5'- cCGAGacgcgacGCgGCGGCGCCGAAggggcuccUGCGggGa -3'
miRNA:   3'- -GCUCa------CGgCGUCGCGGCUU--------GCGCuuU- -5'
24385 3' -57.9 NC_005264.1 + 15452 0.66 0.839766
Target:  5'- uGAGUGUgGacaAGCGCgacGACGCGAAAg -3'
miRNA:   3'- gCUCACGgCg--UCGCGgc-UUGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 16432 0.67 0.787309
Target:  5'- uCGAcUGCCGCGGgGCCugcccgcggguguGAACGUGGu- -3'
miRNA:   3'- -GCUcACGGCGUCgCGG-------------CUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 16641 0.71 0.561227
Target:  5'- uCGAGUG-CGUcucuGGUGCgGAGCGCGAGGg -3'
miRNA:   3'- -GCUCACgGCG----UCGCGgCUUGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 20255 0.66 0.847754
Target:  5'- aGGG-GuuGCGGCGCgGccuCGCGGAGg -3'
miRNA:   3'- gCUCaCggCGUCGCGgCuu-GCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 21566 0.66 0.814721
Target:  5'- cCGAGga-CGcCGGCGCCGAGacCGUGGAAa -3'
miRNA:   3'- -GCUCacgGC-GUCGCGGCUU--GCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 24196 0.66 0.831593
Target:  5'- aGucUGgCGCGGUGCCGGugGcCGAAGc -3'
miRNA:   3'- gCucACgGCGUCGCGGCUugC-GCUUU- -5'
24385 3' -57.9 NC_005264.1 + 24840 0.69 0.672185
Target:  5'- gGAGUGCCGCuGCuuCCGcACgGCGAAGu -3'
miRNA:   3'- gCUCACGGCGuCGc-GGCuUG-CGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 26127 0.7 0.601371
Target:  5'- --cGUGgCGCGGCGCCGAGagaaugGCGAGc -3'
miRNA:   3'- gcuCACgGCGUCGCGGCUUg-----CGCUUu -5'
24385 3' -57.9 NC_005264.1 + 26488 0.68 0.711133
Target:  5'- aGAGgGCCcguGCGGCGCCGAAccagcuucuacgcCGCGGc- -3'
miRNA:   3'- gCUCaCGG---CGUCGCGGCUU-------------GCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 31839 0.66 0.831593
Target:  5'- --cGUGCCGC-GCGCggcaagacaUGGGCGCGAc- -3'
miRNA:   3'- gcuCACGGCGuCGCG---------GCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 33251 0.7 0.61148
Target:  5'- aCGAG-GaaGCAGCGgCGAACGCGcGAu -3'
miRNA:   3'- -GCUCaCggCGUCGCgGCUUGCGCuUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.