Results 1 - 20 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24385 | 3' | -57.9 | NC_005264.1 | + | 120406 | 1.06 | 0.003153 |
Target: 5'- gCGAGUGCCGCAGCGCCGAACGCGAAAu -3' miRNA: 3'- -GCUCACGGCGUCGCGGCUUGCGCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 75683 | 0.79 | 0.202061 |
Target: 5'- gGAGUcGCgCGCAGCGCCGucuuucGGCGCGAAGa -3' miRNA: 3'- gCUCA-CG-GCGUCGCGGC------UUGCGCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 250 | 0.78 | 0.222767 |
Target: 5'- --uGUGCgGCGGCGCUGGACGCGGc- -3' miRNA: 3'- gcuCACGgCGUCGCGGCUUGCGCUuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 35481 | 0.75 | 0.361991 |
Target: 5'- aGAGUGCCGCG--GCCGAuCGCGAc- -3' miRNA: 3'- gCUCACGGCGUcgCGGCUuGCGCUuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 76191 | 0.73 | 0.455804 |
Target: 5'- aGGGUGucccCCGCGGCGCCcAACGCaGAAGa -3' miRNA: 3'- gCUCAC----GGCGUCGCGGcUUGCG-CUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 33254 | 0.72 | 0.474237 |
Target: 5'- ----cGCCGCAGCGCCugcaGAGCGCGcAAGa -3' miRNA: 3'- gcucaCGGCGUCGCGG----CUUGCGC-UUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 5526 | 0.72 | 0.493036 |
Target: 5'- uGAcaGCCGCGGCGUCucGCGCGGAGc -3' miRNA: 3'- gCUcaCGGCGUCGCGGcuUGCGCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 113491 | 0.72 | 0.52088 |
Target: 5'- cCGAucuUGCCGCGuuccuccGgGCCGAGCGCGAAc -3' miRNA: 3'- -GCUc--ACGGCGU-------CgCGGCUUGCGCUUu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 129507 | 0.71 | 0.54142 |
Target: 5'- aGGGUuUgGCGGCGCCGGAgGCGAc- -3' miRNA: 3'- gCUCAcGgCGUCGCGGCUUgCGCUuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 16641 | 0.71 | 0.561227 |
Target: 5'- uCGAGUG-CGUcucuGGUGCgGAGCGCGAGGg -3' miRNA: 3'- -GCUCACgGCG----UCGCGgCUUGCGCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 26127 | 0.7 | 0.601371 |
Target: 5'- --cGUGgCGCGGCGCCGAGagaaugGCGAGc -3' miRNA: 3'- gcuCACgGCGUCGCGGCUUg-----CGCUUu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 152278 | 0.7 | 0.61148 |
Target: 5'- aCGAG-GaaGCAGCGgCGAACGCGcGAu -3' miRNA: 3'- -GCUCaCggCGUCGCgGCUUGCGCuUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 33251 | 0.7 | 0.61148 |
Target: 5'- aCGAG-GaaGCAGCGgCGAACGCGcGAu -3' miRNA: 3'- -GCUCaCggCGUCGCgGCUUGCGCuUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 64624 | 0.7 | 0.61148 |
Target: 5'- -cGGUGCUguccaGCAGCGCCGGAuucUGCGAu- -3' miRNA: 3'- gcUCACGG-----CGUCGCGGCUU---GCGCUuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 142678 | 0.7 | 0.62059 |
Target: 5'- aCGucGUGCCGCgaucuugGGCGCCGGcgGCGCGc-- -3' miRNA: 3'- -GCu-CACGGCG-------UCGCGGCU--UGCGCuuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 127384 | 0.7 | 0.631735 |
Target: 5'- gCGAccGUCGCugaugcuuaccGGCGCCGGACGCGGc- -3' miRNA: 3'- -GCUcaCGGCG-----------UCGCGGCUUGCGCUuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 51950 | 0.7 | 0.631735 |
Target: 5'- aGGGUGCCGCuaacGCGUCGugucGGCGCGc-- -3' miRNA: 3'- gCUCACGGCGu---CGCGGC----UUGCGCuuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 8357 | 0.7 | 0.631735 |
Target: 5'- gCGAccGUCGCugaugcuuaccGGCGCCGGACGCGGc- -3' miRNA: 3'- -GCUcaCGGCG-----------UCGCGGCUUGCGCUuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 138337 | 0.7 | 0.631735 |
Target: 5'- gCGcGUGCgCGacaaGGCGcCCGAACGCGAc- -3' miRNA: 3'- -GCuCACG-GCg---UCGC-GGCUUGCGCUuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 104167 | 0.69 | 0.641867 |
Target: 5'- cCGGGUGCgccUGCAGCGCCGGagaaugguAUGUGGu- -3' miRNA: 3'- -GCUCACG---GCGUCGCGGCU--------UGCGCUuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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