miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24385 3' -57.9 NC_005264.1 + 26488 0.68 0.711133
Target:  5'- aGAGgGCCcguGCGGCGCCGAAccagcuucuacgcCGCGGc- -3'
miRNA:   3'- gCUCaCGG---CGUCGCGGCUU-------------GCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 127384 0.7 0.631735
Target:  5'- gCGAccGUCGCugaugcuuaccGGCGCCGGACGCGGc- -3'
miRNA:   3'- -GCUcaCGGCG-----------UCGCGGCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 104167 0.69 0.641867
Target:  5'- cCGGGUGCgccUGCAGCGCCGGagaaugguAUGUGGu- -3'
miRNA:   3'- -GCUCACG---GCGUCGCGGCU--------UGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 97430 0.69 0.6621
Target:  5'- uGAGcGCUGCgGGCGCCGc-CGCGGAu -3'
miRNA:   3'- gCUCaCGGCG-UCGCGGCuuGCGCUUu -5'
24385 3' -57.9 NC_005264.1 + 24840 0.69 0.672185
Target:  5'- gGAGUGCCGCuGCuuCCGcACgGCGAAGu -3'
miRNA:   3'- gCUCACGGCGuCGc-GGCuUG-CGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 52201 0.69 0.672185
Target:  5'- uGAGgGCCGUggGGCGCgGuGGCGCGAGc -3'
miRNA:   3'- gCUCaCGGCG--UCGCGgC-UUGCGCUUu -5'
24385 3' -57.9 NC_005264.1 + 60598 0.69 0.672185
Target:  5'- uCGAGccccuucucguaUGCCGCGGCaGCCGGcucGCGCaGGAGc -3'
miRNA:   3'- -GCUC------------ACGGCGUCG-CGGCU---UGCG-CUUU- -5'
24385 3' -57.9 NC_005264.1 + 95919 0.69 0.692251
Target:  5'- -aAGUGgUGCAGCGCCGGAgaCGAGAa -3'
miRNA:   3'- gcUCACgGCGUCGCGGCUUgcGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 162746 0.69 0.692251
Target:  5'- uCGAGcgGcCCGCGuGCGCCGAuaagUGCGAGGu -3'
miRNA:   3'- -GCUCa-C-GGCGU-CGCGGCUu---GCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 51950 0.7 0.631735
Target:  5'- aGGGUGCCGCuaacGCGUCGugucGGCGCGc-- -3'
miRNA:   3'- gCUCACGGCGu---CGCGGC----UUGCGCuuu -5'
24385 3' -57.9 NC_005264.1 + 142678 0.7 0.62059
Target:  5'- aCGucGUGCCGCgaucuugGGCGCCGGcgGCGCGc-- -3'
miRNA:   3'- -GCu-CACGGCG-------UCGCGGCU--UGCGCuuu -5'
24385 3' -57.9 NC_005264.1 + 152278 0.7 0.61148
Target:  5'- aCGAG-GaaGCAGCGgCGAACGCGcGAu -3'
miRNA:   3'- -GCUCaCggCGUCGCgGCUUGCGCuUU- -5'
24385 3' -57.9 NC_005264.1 + 250 0.78 0.222767
Target:  5'- --uGUGCgGCGGCGCUGGACGCGGc- -3'
miRNA:   3'- gcuCACGgCGUCGCGGCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 35481 0.75 0.361991
Target:  5'- aGAGUGCCGCG--GCCGAuCGCGAc- -3'
miRNA:   3'- gCUCACGGCGUcgCGGCUuGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 76191 0.73 0.455804
Target:  5'- aGGGUGucccCCGCGGCGCCcAACGCaGAAGa -3'
miRNA:   3'- gCUCAC----GGCGUCGCGGcUUGCG-CUUU- -5'
24385 3' -57.9 NC_005264.1 + 33254 0.72 0.474237
Target:  5'- ----cGCCGCAGCGCCugcaGAGCGCGcAAGa -3'
miRNA:   3'- gcucaCGGCGUCGCGG----CUUGCGC-UUU- -5'
24385 3' -57.9 NC_005264.1 + 5526 0.72 0.493036
Target:  5'- uGAcaGCCGCGGCGUCucGCGCGGAGc -3'
miRNA:   3'- gCUcaCGGCGUCGCGGcuUGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 16641 0.71 0.561227
Target:  5'- uCGAGUG-CGUcucuGGUGCgGAGCGCGAGGg -3'
miRNA:   3'- -GCUCACgGCG----UCGCGgCUUGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 26127 0.7 0.601371
Target:  5'- --cGUGgCGCGGCGCCGAGagaaugGCGAGc -3'
miRNA:   3'- gcuCACgGCGUCGCGGCUUg-----CGCUUu -5'
24385 3' -57.9 NC_005264.1 + 64624 0.7 0.61148
Target:  5'- -cGGUGCUguccaGCAGCGCCGGAuucUGCGAu- -3'
miRNA:   3'- gcUCACGG-----CGUCGCGGCUU---GCGCUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.