miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24386 5' -53 NC_005264.1 + 100423 0.66 0.973823
Target:  5'- uGUGCUGCgaAGAAGCcGGGCccaACAGAauuaCUc -3'
miRNA:   3'- -CACGAUG--UCUUCGaCCUG---UGUCUg---GA- -5'
24386 5' -53 NC_005264.1 + 150531 0.66 0.970979
Target:  5'- uGUGCUA---AAGCUGGAUaguACAGugCg -3'
miRNA:   3'- -CACGAUgucUUCGACCUG---UGUCugGa -5'
24386 5' -53 NC_005264.1 + 20248 0.66 0.970979
Target:  5'- gGUGg-GCAGggGUUGcGGCGCGG-CCUc -3'
miRNA:   3'- -CACgaUGUCuuCGAC-CUGUGUCuGGA- -5'
24386 5' -53 NC_005264.1 + 93067 0.66 0.96792
Target:  5'- cUGCUGCGGGAGg-GGcCGCGgcGACCUc -3'
miRNA:   3'- cACGAUGUCUUCgaCCuGUGU--CUGGA- -5'
24386 5' -53 NC_005264.1 + 19284 0.66 0.96696
Target:  5'- uUGUUuccACAGGuauccagaggaggcAGCcGGACACAGGCCc -3'
miRNA:   3'- cACGA---UGUCU--------------UCGaCCUGUGUCUGGa -5'
24386 5' -53 NC_005264.1 + 86464 0.66 0.964639
Target:  5'- -cGCUGCAGGAGCUGaGC-CAGGa-- -3'
miRNA:   3'- caCGAUGUCUUCGACcUGuGUCUgga -5'
24386 5' -53 NC_005264.1 + 134091 0.66 0.96113
Target:  5'- -aGCUAgAGcacGuCUGGGCGCAGGCUg -3'
miRNA:   3'- caCGAUgUCuu-C-GACCUGUGUCUGGa -5'
24386 5' -53 NC_005264.1 + 106943 0.66 0.957387
Target:  5'- -aGCUGCGGcGGCcgcaGGAuCugAGGCCUg -3'
miRNA:   3'- caCGAUGUCuUCGa---CCU-GugUCUGGA- -5'
24386 5' -53 NC_005264.1 + 67008 0.66 0.957387
Target:  5'- aGUGCUGCcuggacGGAGCggcGGccuuGCGCAGGCCc -3'
miRNA:   3'- -CACGAUGu-----CUUCGa--CC----UGUGUCUGGa -5'
24386 5' -53 NC_005264.1 + 95222 0.66 0.957387
Target:  5'- cGUGUcggacuacgUACAGAGGCUGacCGCGGACUUu -3'
miRNA:   3'- -CACG---------AUGUCUUCGACcuGUGUCUGGA- -5'
24386 5' -53 NC_005264.1 + 98544 0.66 0.957387
Target:  5'- --uCUGCGGAGGCaUGGACgcgaACAGugCg -3'
miRNA:   3'- cacGAUGUCUUCG-ACCUG----UGUCugGa -5'
24386 5' -53 NC_005264.1 + 148309 0.67 0.953405
Target:  5'- -cGCUucGCAGAgucaucgcguGGCccgGGAUAUAGACCg -3'
miRNA:   3'- caCGA--UGUCU----------UCGa--CCUGUGUCUGGa -5'
24386 5' -53 NC_005264.1 + 100891 0.67 0.949179
Target:  5'- aUGCUACGGggGCaGaGAUGCGgugaacgacGACCUg -3'
miRNA:   3'- cACGAUGUCuuCGaC-CUGUGU---------CUGGA- -5'
24386 5' -53 NC_005264.1 + 25086 0.67 0.949179
Target:  5'- cGUGCUGCAGAAGCgaga-ACAGGUCUu -3'
miRNA:   3'- -CACGAUGUCUUCGaccugUGUCUGGA- -5'
24386 5' -53 NC_005264.1 + 153882 0.67 0.944707
Target:  5'- gGUGCUGCAGcGAGUUGGcCGgcccgaAGGCCg -3'
miRNA:   3'- -CACGAUGUC-UUCGACCuGUg-----UCUGGa -5'
24386 5' -53 NC_005264.1 + 59751 0.67 0.939984
Target:  5'- aUGggGCGGcGGCUGcGACGCGGACgCUu -3'
miRNA:   3'- cACgaUGUCuUCGAC-CUGUGUCUG-GA- -5'
24386 5' -53 NC_005264.1 + 125985 0.67 0.939984
Target:  5'- cGUGCUGCGGAGGa--GGgGCAGACa- -3'
miRNA:   3'- -CACGAUGUCUUCgacCUgUGUCUGga -5'
24386 5' -53 NC_005264.1 + 36244 0.68 0.929779
Target:  5'- aUGCUgccaaACGGGAGCUGG-CGC-GAUCUg -3'
miRNA:   3'- cACGA-----UGUCUUCGACCuGUGuCUGGA- -5'
24386 5' -53 NC_005264.1 + 250 0.68 0.929779
Target:  5'- uGUGCgGCGGc-GCUGGACGCGGcagaaGCCc -3'
miRNA:   3'- -CACGaUGUCuuCGACCUGUGUC-----UGGa -5'
24386 5' -53 NC_005264.1 + 72269 0.68 0.928161
Target:  5'- -cGCUGCAGAGGCguacUGGccggcaacgaggagACGCGGugCg -3'
miRNA:   3'- caCGAUGUCUUCG----ACC--------------UGUGUCugGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.