Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24388 | 3' | -44.5 | NC_005264.1 | + | 48561 | 0.71 | 0.999018 |
Target: 5'- aCGAGGGgggCAuugaugcCACGACGCGCUUcgcgGUGg -3' miRNA: 3'- -GCUUCUa--GUuu-----GUGUUGCGCGAA----UAC- -5' |
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24388 | 3' | -44.5 | NC_005264.1 | + | 87582 | 0.71 | 0.999018 |
Target: 5'- ---uGAUU-AACACGACGCGCUUGc- -3' miRNA: 3'- gcuuCUAGuUUGUGUUGCGCGAAUac -5' |
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24388 | 3' | -44.5 | NC_005264.1 | + | 148866 | 0.71 | 0.999361 |
Target: 5'- aGAGGAgagCGuACGCAucuuuggcGCGCGCUUAUc -3' miRNA: 3'- gCUUCUa--GUuUGUGU--------UGCGCGAAUAc -5' |
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24388 | 3' | -44.5 | NC_005264.1 | + | 123143 | 0.71 | 0.999489 |
Target: 5'- cCGAGGGUguccccucugcCAAACACGGC-CGCUUGUc -3' miRNA: 3'- -GCUUCUA-----------GUUUGUGUUGcGCGAAUAc -5' |
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24388 | 3' | -44.5 | NC_005264.1 | + | 68493 | 0.68 | 0.999964 |
Target: 5'- --uAGAUCGAACGCGGCGacgGCUUucUGg -3' miRNA: 3'- gcuUCUAGUUUGUGUUGCg--CGAAu-AC- -5' |
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24388 | 3' | -44.5 | NC_005264.1 | + | 144994 | 0.68 | 0.999952 |
Target: 5'- ---cGGUCGAACAgcGCGCGCgagAUGg -3' miRNA: 3'- gcuuCUAGUUUGUguUGCGCGaa-UAC- -5' |
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24388 | 3' | -44.5 | NC_005264.1 | + | 152616 | 0.68 | 0.999952 |
Target: 5'- --cGGGUCAccCGCGGCGCGUUUGg- -3' miRNA: 3'- gcuUCUAGUuuGUGUUGCGCGAAUac -5' |
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24388 | 3' | -44.5 | NC_005264.1 | + | 65084 | 0.69 | 0.999851 |
Target: 5'- uGAGGGUCAAACACGAacaccggguCGUGCc---- -3' miRNA: 3'- gCUUCUAGUUUGUGUU---------GCGCGaauac -5' |
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24388 | 3' | -44.5 | NC_005264.1 | + | 59826 | 0.7 | 0.999595 |
Target: 5'- uGAGGGUCGcguACGcCAGCGCGCa---- -3' miRNA: 3'- gCUUCUAGUu--UGU-GUUGCGCGaauac -5' |
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24388 | 3' | -44.5 | NC_005264.1 | + | 71123 | 0.7 | 0.999595 |
Target: 5'- uGAgcAGAUaaaGGACACAGCGCGCc---- -3' miRNA: 3'- gCU--UCUAg--UUUGUGUUGCGCGaauac -5' |
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24388 | 3' | -44.5 | NC_005264.1 | + | 3462 | 0.67 | 0.99999 |
Target: 5'- aCGAGGGucUCGGGgGCGAUGgGCUUGc- -3' miRNA: 3'- -GCUUCU--AGUUUgUGUUGCgCGAAUac -5' |
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24388 | 3' | -44.5 | NC_005264.1 | + | 24624 | 0.67 | 0.99999 |
Target: 5'- cCGAuuGGUCAccGCGCAGCGCauGCUUAa- -3' miRNA: 3'- -GCUu-CUAGUu-UGUGUUGCG--CGAAUac -5' |
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24388 | 3' | -44.5 | NC_005264.1 | + | 127851 | 0.67 | 0.99999 |
Target: 5'- cCGgcGGUCuaGAACcCGGCGCGCgaAUGg -3' miRNA: 3'- -GCuuCUAG--UUUGuGUUGCGCGaaUAC- -5' |
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24388 | 3' | -44.5 | NC_005264.1 | + | 76133 | 0.67 | 0.999995 |
Target: 5'- uGcAGAUCuuGCGCGACGCGgUa--- -3' miRNA: 3'- gCuUCUAGuuUGUGUUGCGCgAauac -5' |
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24388 | 3' | -44.5 | NC_005264.1 | + | 121429 | 0.66 | 0.999999 |
Target: 5'- -uGGGAUUucuggcguguccgAGACACAGCGCGCg---- -3' miRNA: 3'- gcUUCUAG-------------UUUGUGUUGCGCGaauac -5' |
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24388 | 3' | -44.5 | NC_005264.1 | + | 98519 | 0.66 | 0.999999 |
Target: 5'- aCGggGGgccUCAgucuuggcAGCgGCAACGCGCU-GUGg -3' miRNA: 3'- -GCuuCU---AGU--------UUG-UGUUGCGCGAaUAC- -5' |
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24388 | 3' | -44.5 | NC_005264.1 | + | 146626 | 0.66 | 0.999999 |
Target: 5'- aGAGGGU--AGCGCGGCGCGUc---- -3' miRNA: 3'- gCUUCUAguUUGUGUUGCGCGaauac -5' |
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24388 | 3' | -44.5 | NC_005264.1 | + | 83174 | 0.66 | 0.999999 |
Target: 5'- aUGggGAgaauuugucagcggCAGGCGCGGCGCGaacUAUGc -3' miRNA: 3'- -GCuuCUa-------------GUUUGUGUUGCGCga-AUAC- -5' |
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24388 | 3' | -44.5 | NC_005264.1 | + | 21296 | 0.66 | 0.999999 |
Target: 5'- gGggGAcgCGGAC-CAugGCGgaCUUAUGg -3' miRNA: 3'- gCuuCUa-GUUUGuGUugCGC--GAAUAC- -5' |
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24388 | 3' | -44.5 | NC_005264.1 | + | 119386 | 1.12 | 0.030303 |
Target: 5'- gCGAAGAUCAAACACAACGCGCUUAUGg -3' miRNA: 3'- -GCUUCUAGUUUGUGUUGCGCGAAUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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